Atri003211.1
Basic Information
- Insect
- Abrostola tripartita
- Gene Symbol
- lrrfip2
- Assembly
- GCA_905340225.1
- Location
- HG996491.1:13389952-13402229[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.065 1.5e+03 -1.5 0.8 47 91 58 103 32 107 0.58 2 3 1e-81 2.3e-77 260.5 17.8 1 297 123 418 123 420 0.90 3 3 1 2.2e+04 -7.6 16.9 1 48 417 463 417 490 0.70
Sequence Information
- Coding Sequence
- ATGGGACATCGCTCTGAGCTTGCAACGCCAGACAATAGCGACGAGGAGAGCGGTGATGCTTTTACTGACGCAGATTTTGGTGATTCTGATGATGAAACAATCGTAGACCGTCACGACACAGCCAAATCTTCACACATACCCATAAATGAAACAATGAACGAAGAGGTCCAGAAAAGTTCCGCTACTAATGGCCATTCTAATGGTAATGTGGTGGAGGAACAACCCAGAATAAATGGTCGAAAGAATAGTGACAATCAAACGAGTGATGTTGAAAATCAAAACTTCGTTTTATCGGATTTGCGCAGAGATTCACACGGTGATCAGAATCCTTCGATAGTTGGCATTCTCGGAGATCAACAGAACCATGCAGAGCAACGGTTAGCGGCACGTCGCGCGGCGCGTGCTGAAGCGAGAGAAATACGCATGCGTGAGTTGGAGAGACAGCAGCGAGAACAGGAGGACCATGCCGACAAAGCGTACGACATGTATTCTGGGAAGACACCAGAGACGGTGGGCCGTCGCGGTACCACGCGACTGGCCGCGCTCAGCCCGGCCGGCGTGCACTCGCCGCGGCGCAGCTCTGAGGACTCTGCTGACGACACTTTTAGCATTAAAGACCTGAGGCACGACTTGAAGGAGGTGGAGGAGAAGTTTCGTAAGGCCATGATACTAAACGCGCAGCTGGACAATGACAAGGCCGCACTGGGCTACCAGCTGGAACTGCTCAAGGACCGGATAGAGGAGCTTCACGAAGAGTACGCGCAACTACAGCGCGAGCACAAAGAGAAGTGCTCATCGTTCGAGCGTCTGAAGCGCGAGCACGAGACCGTGAGCCGCGAGCTGTGCGCGGCGCGGGCGGCCGTGCGCGCACGGGACGCCGCCGCCGCGCAGGCCGGCTTCGCCTTCGTGGACGCGCCGCCCGACTGCCCCGCCGAGCCCGCGCCTGCGCCCGCGCAGCCCGCGCAGCCCGCGCAGCCCGCGCAGCCCGCGCTGGCGCTCGTCAGCCACGGCGCCGAGCAGCTGCTCAACGACGCCGGGGAGGGCACGCTAGACGTGCGGTTGCAAAAGCTGTTGAGTTCGAAGCAGTCGCTGGAGTCAGAAGTGCGGAAGCTGAAGCTGCAGCTGAACGAAGAGCGAGCGGCGCGGCAGAACGGAGTCACCAACCACCACGAACACGAGTACGAGAACGAACTGGAGACGGCACGGAAGGCGGTGACGGAGGCCAAGGCGCGCGCGGCGCGGGGCGAGGCCGAGGCCGCGCTGCAGGCCGCGCTGGTGGCTCGCCTCGAGGCGCAGCTGGCGCGGCTCCGCGCCCGCCAGGACCACCAGGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGACGCCGGCTGCAGAGAGAGGCTCGAGAAGCTCTCAACCGGGTCGAAGAGTTGGAGACTGAGAACAGCCACCTCACCAAGCGACTAGACAAGCTCAAGAACGCCAAGTCAGCACTCCTGAAGGACCTGTGA
- Protein Sequence
- MGHRSELATPDNSDEESGDAFTDADFGDSDDETIVDRHDTAKSSHIPINETMNEEVQKSSATNGHSNGNVVEEQPRINGRKNSDNQTSDVENQNFVLSDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYSGKTPETVGRRGTTRLAALSPAGVHSPRRSSEDSADDTFSIKDLRHDLKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSSFERLKREHETVSRELCAARAAVRARDAAAAQAGFAFVDAPPDCPAEPAPAPAQPAQPAQPAQPALALVSHGAEQLLNDAGEGTLDVRLQKLLSSKQSLESEVRKLKLQLNEERAARQNGVTNHHEHEYENELETARKAVTEAKARAARGEAEAALQAALVARLEAQLARLRARQDHQDEHEEQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- iTF_00001195;
- 80% Identity
- -