Npro016620.1
Basic Information
- Insect
- Noctua pronuba
- Gene Symbol
- lrrfip2
- Assembly
- GCA_905220335.1
- Location
- LR999901.1:1934162-1944511[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.36 1.1e+04 -3.9 0.2 253 280 75 103 55 104 0.53 2 3 6.8e-81 2e-76 257.9 25.7 1 298 122 412 122 414 0.90 3 3 1 3e+04 -7.3 15.3 1 49 410 457 408 485 0.57
Sequence Information
- Coding Sequence
- ATGGGACAGCGCTCCGAACTGGCCACGCCTGACAATAGTGACGAGGAGAGCGGGGAAGCCTTCACTGACGGTGATTTTGGTGATTCTGATGACGAAATGCTCGTCGAACGCCCTGATGAAGCGAAGCCTGCTCACATACCGATCATTGAAGCTGTAAAAGATGATATTCAGAAGAATGCTGCTACTAATGGCCACACCAATGGTAGTGCGGATGAGCAGCCCAGAATGAATGGCCGAAAGAATGGTGAAGCTCATTCGAGTGATATGGAAAACCAAAGCTTAGTATTATCGGATTTACGCCGAGATTCACACGGCGATCAGAATCCCTCAATCGTTGGCATTCTCGGCGATCAGCAGAACCATGCGGAGCAGAGGTTAGCAGCGCGACGAGCGGCGCGGGCTGAAGCCAGGGAGATACGAATGCGGGAGCTAGAGAGGCAGCAGCGCGAACAAGAGGACCATGCGGACAAGGCGTACGATATGTATGCGGGAAAGACACCAGAGACGGTGGGTCGCCGCGGCGCTACGAGGCTGACGGCGCTCAGCCCTGCCGTGCACTCGCCCAGACGAAGCTCTGAAGACTCCATCGATGATGGCTTCAGCATCAAGGACCTTAGGCACGAGTTGAAGGAAGTAGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGATAACGACAAGGCGGCGCTCGGCTACCAGCTGGAGCTGCTGAAGGACCGGATAGAGGAGCTGCACGAGGAGTACGCACAGCTGCAGCGCGAACACAGAGAAAAGTGCTCGTCGTTCGAGCGTCTAAAGCGGGAACACGAGTCCGTGTCGCGCGAGCTGAGCGCGGCGCGGGACGCCGTGCGCGCGCGCGACGCGGCCGCCGCCGGCGCCGGGTTCGCCTTCGTGGACGCCGCCGCGCTGGACGCCGCCGCGCGGGAGACGGCCGGCGCCGCCGTGGGCGCCGTGCCGTCCTTGGCGCTGGTCACGCACCAGGCGCAGCAGCTGCTCAATGATGCGGGAGAGGGCACGCTCGACGTGCGGTTGCAAAAGCTGCTGAGCTCGAAGCAGGCGCTGGAGTCGGAGGTGCGCAAACTGAAGCTGCAGCTGAACGAGGAGCGCGCCGCGCGCCAGAACGGAGTCACCAACCATCACGACCAGGAGTACGAGAATGAACTGGAAACAGTCCGCAAGTCAGTGTCGGAAGCGAAGGGTCGCGCGGCGCGGGCTGAGGCCGAGGCGGCGCTGCAGGCGGCGCACGTGGCGCGCCTGGAGGCGCAGCTGCAGCGCCTGCGCGCGCGGCAGGACCACGCCGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGAGAGGCTCGGGAAGCACTCAACCGGGTCGAGGAGCTGGAGACTGAGAACAGCCACCTCACGAAACGACTCGACAAGCTCAAGAACGCGAAGTCGGCGCTCCTCAAGGACCTGTGA
- Protein Sequence
- MGQRSELATPDNSDEESGEAFTDGDFGDSDDEMLVERPDEAKPAHIPIIEAVKDDIQKNAATNGHTNGSADEQPRMNGRKNGEAHSSDMENQSLVLSDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTPETVGRRGATRLTALSPAVHSPRRSSEDSIDDGFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSFERLKREHESVSRELSAARDAVRARDAAAAGAGFAFVDAAALDAAARETAGAAVGAVPSLALVTHQAQQLLNDAGEGTLDVRLQKLLSSKQALESEVRKLKLQLNEERAARQNGVTNHHDQEYENELETVRKSVSEAKGRAARAEAEAALQAAHVARLEAQLQRLRARQDHADEHEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- iTF_00745719;
- 80% Identity
- -