Msep021091.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Mythimna separata
Gene Symbol
retn
Assembly
GCA_030763345.1
Location
CM061185.1:14387844-14393182[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 1.2e-19 2.7e-16 60.8 0.0 16 89 16 87 7 87 0.95
2 2 7.7 1.7e+04 -2.7 0.0 25 38 215 228 177 230 0.58

Sequence Information

Coding Sequence
ATGTCGTCGTATAAAGGTGTGATTAATGTCTTCAACGGGATACCTACAGGAACTCCAATCAACCGGCTACCTATAATGGCGAAGTCAGTGCTGGACCTGTACGAGCTGTACAACTTGGTGATCGCTCGCGGCGGCTTGGTTGAGGTGATCAACAAGAAGCTGTGGCAAGAGATCATCAAGGGGCTGCGACTGCCTTCCTCCATCACCTCGGCTGCTTTCACGTTACGTACACAGTATATGAAATACCTGTATGACTATGAGTGCGAGAAGAAGAACCTCTCAACCAGGAGTGAGCTGGACGCAGCTATAGAGGGCAACAAGAGGGAGGGGCGTCGTGCTTCGGGACAGTACGACGCGCAGGCTGCACTAGCTATGCCCCCACTAAACCGCGTGCCCGCGTCTCTCGCGCAGCTGTCGCAGCACATGCAGCCGCTGTCGCTGTCCCTCGGGGGCGTAGCACCCCGCCTGCCGCCACTGCCACCACACGCACCGCACCTTGCACAGCACGACATCGAGTACAGGGTGCGCGAGTATATGAAGATGATCCAGCAGCAGAGAGAGCTTATGAGAAATGGCTCCGAATCACCTCCCAGCAATGGTCCTGCACCAATTATGTCACCCCGCGATGCAGCCGCCCTCAGTGCCATCGACGTGTCCCGCCTCACTCTCTGGTCGCTctacaacaataacaataacaacagtCCACAACCGGACCTTGAACCACAACGCGAGGCTCTGAACCTGAGCGAGAGCCCCAACTCGATGACGTCAGGCGGCAAGCGCGAGGCGTGCCgctcgcccgcgccgcccgccaagCGCCGCACGCCGCGGCCGGCGTCGCGCCCCGCCTCGCCGCGCTCCGACCTGCACTCGCCGCCGCAGCACCGCCACAGCCGCCGCGACGCCGCCTCACCGCCACAGATCAACGGCATGCCCAATACTAATGGAGTTAATGGTGCTGCCTTCAAGATTACTACCAGAGGAGACGCGAGCACAGGAGACCAGCAACTAGTAGTGTCAATAGAGCTGAACGGAGTCACTTATGAAGGAGTACTCTTCCCCTCAGGAAATGGTCAGAACGGACACAGACAAATGGTGTCTTAA
Protein Sequence
MSSYKGVINVFNGIPTGTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPPLNRVPASLAQLSQHMQPLSLSLGGVAPRLPPLPPHAPHLAQHDIEYRVREYMKMIQQQRELMRNGSESPPSNGPAPIMSPRDAAALSAIDVSRLTLWSLYNNNNNNSPQPDLEPQREALNLSESPNSMTSGGKREACRSPAPPAKRRTPRPASRPASPRSDLHSPPQHRHSRRDAASPPQINGMPNTNGVNGAAFKITTRGDASTGDQQLVVSIELNGVTYEGVLFPSGNGQNGHRQMVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00237249; iTF_01061665; iTF_00685214; iTF_01531748; iTF_01532811; iTF_00928442; iTF_01064416; iTF_00745410; iTF_00185923; iTF_00282051; iTF_00363812; iTF_00622596; iTF_00906842; iTF_01030916; iTF_00185094; iTF_00017127; iTF_00000968; iTF_00850376; iTF_00120273; iTF_01362280; iTF_01361364; iTF_00383401; iTF_00783209; iTF_00784176; iTF_01285329; iTF_01029001; iTF_01025756; iTF_00771658; iTF_01062538; iTF_01027083; iTF_01076171; iTF_00147085; iTF_01063533; iTF_00017964; iTF_01377253; iTF_01259863; iTF_00851502; iTF_00299932; iTF_01526800; iTF_01525714; iTF_01534577; iTF_00677326; iTF_00124020; iTF_00122137; iTF_00123133; iTF_00121178; iTF_00726067; iTF_01119062; iTF_00111383; iTF_01118041; iTF_01116952; iTF_01192406; iTF_01230294; iTF_00373688; iTF_00374954; iTF_00448800; iTF_01092846; iTF_00808884; iTF_00924373; iTF_01094680; iTF_01093820; iTF_00757920; iTF_01533720; iTF_00037561; iTF_00039577; iTF_00040577; iTF_00042414; iTF_00042415; iTF_00041562; iTF_00043264; iTF_00444892; iTF_00445893; iTF_01439676; iTF_01440772; iTF_00907663; iTF_00301884; iTF_00654018; iTF_00000100; iTF_01072231; iTF_00149160; iTF_00148268; iTF_00772661; iTF_00834409; iTF_00837251; iTF_01501870; iTF_00447951; iTF_00680303; iTF_00072049; iTF_00171539; iTF_01246612; iTF_01245719; iTF_00300953; iTF_01208989; iTF_00172512; iTF_01084029; iTF_01339741; iTF_01538525; iTF_00887998; iTF_01028043; iTF_01221278; iTF_00326867; iTF_01424831; iTF_00973504;
90% Identity
iTF_01025756;
80% Identity
-