Cinc012117.1
Basic Information
- Insect
- Chrysodeixis includens
- Gene Symbol
- retn
- Assembly
- GCA_941860345.1
- Location
- OW796104.1:4057676-4067761[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.3e-20 4.9e-17 62.4 0.0 12 89 48 123 45 123 0.95 2 2 8.3 1.2e+04 -3.0 0.0 25 38 252 265 214 266 0.56
Sequence Information
- Coding Sequence
- ATGGGCCGCGTGCAGGGCGCGGGGGCGCGGGGGCGCGAGGGCGCGGCCGCCACAATGTTGCACCGGATAGGGCCGACCGTTCGCTGTTTTAATGTCTCTCAGACGGAATTACGCTGGATTGTTCTCAACTTTAGTGCTCCCTTCATGATTGATCGTTGCACACCGATCAATCGGCTTCCGATCATGGCGAAGTCTGTGCTGGACCTGTATGAGCTGTACAACTTGGTGATCGCACGCGGCGGCCTCGTGGAGGTCATCAACAAGAAGCTGTGGCAGGAGATCATCAAGGGACTCCGGCTGCCCTCCTCCATCACCTCCGCTGCATTTACTTTGCGTACACAATACATGAAGTATTTGTACGACTATGAGTGTGAGAAGAAGAACCTGTCGACCCGGAGCGAGCTGGATGCGGCTATAGAAGGAAACAAGCGTGAGGGACGCCGTGCCTCGGGACAATATGATGCACAGGCCGCCTTAGCTATGCCTCCCCTTAACCGTGGTGTCCCAGCATCACTCGCGCAGCTGTCGCAACACATGCAGCCTCTCTCGCTCTCGCTCGCCGGCGTGGCGCCGCGCCTGCCGCCGCTGCCGCCGCACGCACCACACCTCGGACAACACGATATAGAGTACAGAGTTCGCGAGTATATGAAGATGATACAGCAGCAGAGAGAGCTTATGAGAAATGGCTCGGAATCTCCTCCGAACAACGGTCCAGCACCGATCATGTCTCCCCGCGACGCCGCCGCGCTCAGTGCCATCGATGTCTCCCGCCTCACACTCTGGTCGCTCTACAACAATAACAACAACAACAGTCCACAGCCAGACCTTGAGCCGCAACGCGAGGCTCTGAATCTGAGCGAGAGTCCGAACTCGAGCGTGAGTGGGGGCAAGCGCGAGGCGTGTCGGTCGCCCGCGCCGCCCGCCAAGCGTCGCACGCCGCGGCCCGTGTCCCCGCGCGACACACGCGACGCGCGCGACTCTCGCGACTCGCACGCGCCGCTCTCGCCTCACTCGCCGCATTCGCCGCATGCACGACGACATGCTCGCAGAGATGCTTCACCGCCACAGATCAACGGCATGCCCAATACTAATGGTGTTAATGGAGCTGCCTTCAAGATTACTACCAGAGGTGACGCAACCACAGGTGACCAGCAGCTAGTGGTGTCAATAGAACTGAACGGAGTAACGTACGAGGGCGTGCTCTTCCCATCAGGAAACGGTCAAAACGGACACAGGCAAATGGTGTCCTAA
- Protein Sequence
- MGRVQGAGARGREGAAATMLHRIGPTVRCFNVSQTELRWIVLNFSAPFMIDRCTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPPLNRGVPASLAQLSQHMQPLSLSLAGVAPRLPPLPPHAPHLGQHDIEYRVREYMKMIQQQRELMRNGSESPPNNGPAPIMSPRDAAALSAIDVSRLTLWSLYNNNNNNSPQPDLEPQREALNLSESPNSSVSGGKREACRSPAPPAKRRTPRPVSPRDTRDARDSRDSHAPLSPHSPHSPHARRHARRDASPPQINGMPNTNGVNGAAFKITTRGDATTGDQQLVVSIELNGVTYEGVLFPSGNGQNGHRQMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01029938;
- 90% Identity
- iTF_01221278;
- 80% Identity
- -