g6385.t1
Basic Information
- Insect
- Amphipyra tragopoginis
- Gene Symbol
- retn
- Assembly
- GCA_905220435.1
- Location
- HG992010.1:9423119-9428030[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-17 4.8e-14 51.5 0.1 29 89 4 62 1 62 0.93 2 2 0.61 2.6e+03 -2.1 0.0 25 38 179 203 151 206 0.55
Sequence Information
- Coding Sequence
- ATGGCAAAGTCAGTGCTAGACCTGTACGAGCTATACAACCTAGTGATAGCTCGCGGCGGGCTGGTGGAGGTGATCAACAAGAAGCTGTGGCAGGAGATCATCAAGGGACTGCGGCTGCCCTCGTCCATCACGTCCGCTGCCTTCACGTTACGCACACAATACATGAAATACCTATACGACTATGAGTGTGAAAAGAAAAACCTGTCAACTAGGAGTGAACTGGACGCAGCCATTGAAGGCAACAAACGTGAGGGCCGCCGCGCCTCGGGGCAATACGATGCACAAGCCGCATTGGCTATGCCCCCCCTCAACCGCGTGCCGGCATCACTGGCACAGCTGTCGCAGCACATGCAACCGCTGTCGCTGTCGCTGGGGGGCGTGGCTCCGCGCCTACCGCCGCTACcaccgcacgcgccgcatcttgcGCAGCACGACATTGAATACAGGGTGCGGGAGTACATGAAGATGATACAGCAGCAAAGGGAGCTCATGAGGAATGGCTCTGAATCGCCCCCCAGCAACGCACCAGCACCAATTATGTCTCCTCGAGACGCAGCCGCCCTCAGTGCCATCGACGTATCCCGCCTCACTCTCTGGTCCCTCTATAAcaataacaacaacaacagCCCACAACCAGACCTTGAACCACAACGCGAGGCTCTGAACCTGAGCGAGAGCCCCAACTCCCTGACGAGCGGCGGCAAGCGAGAGGCGTGTCGCTCGCCCGCGCCGCCCGCCAAGCGCCGCACGCCGCGCCCCGCCTCGCCGCGCTCCGACCTGCACTCGCCGCCCGCGCACCGGCACGCGAGGCGAGATGCTACATCACCGCCGCAGATCAATGGACTGCCCAATGCCAATGGTGTCAATGGGGCTGCCTTCAAGATTACCACCAGAGGTGACGCGACCACAGGAGACCAGCAGTTAGTGGTGTCAATAGAGCTGAATGGTGTCACGTATGAAGGCGTGCTCTTCCCCTCAGGCAACGGCCAGAACGGACACAGGCAAATGGTGTCCTAA
- Protein Sequence
- MAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPPLNRVPASLAQLSQHMQPLSLSLGGVAPRLPPLPPHAPHLAQHDIEYRVREYMKMIQQQRELMRNGSESPPSNAPAPIMSPRDAAALSAIDVSRLTLWSLYNNNNNNSPQPDLEPQREALNLSESPNSLTSGGKREACRSPAPPAKRRTPRPASPRSDLHSPPAHRHARRDATSPPQINGLPNANGVNGAAFKITTRGDATTGDQQLVVSIELNGVTYEGVLFPSGNGQNGHRQMVS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01029938;
- 90% Identity
- iTF_01025756;
- 80% Identity
- -