Pumb018959.2
Basic Information
- Insect
- Pyrrhia umbra
- Gene Symbol
- retn
- Assembly
- GCA_963891755.1
- Location
- OY982933.1:4800834-4805920[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6e-19 8.4e-16 59.0 0.0 18 89 20 89 13 89 0.94 2 2 4.6 1.5e+04 -2.7 0.0 25 38 217 230 179 232 0.58
Sequence Information
- Coding Sequence
- ATGCGATGCGATTTAGCACGCTCGCCCTGTTGCCCACTTGACGCCTGTTGTCCGAGCACTCCAATTAACCGGCTACCGATAATGGCGAAGTCGGTGTTGGACCTGTATGAGCTGTATAACCTGGTGATAGCTCGCGGCGGCCTGGTCGAGGTGATCAATAAGAAGCTGTGGCAGGAGATCATCAAGGGATTGCGGCTGCCGTCTTCTATCACATCTGCTGCTTTCACGTTACGTACACAATACATGAAATACCTATACGACTATGAGTGTGAGAAGAAAAATCTGTCTACTAGGAGCGAGCTGGACGCAGCTATTGAAGGCAATAAGCGTGAGGGGCGCCGCGCCTCGGGACAGTACGACGCACAAGCTGCGTTAGCTATGCCCCCTCTAAACCGCGTGCCCGCGTCTCTCGCGCAGCTGTCGCAGCACATGCAGCCGCTGTCGCTGTCGCTGGGGGGCGTGGCGCCGCGCCTGCCGCCGCTGCCGCCGCACGCGCCACATATCGCGCAGCACGACATCGAGTACAGGGTGCGGGAGTACATGAAGATGATACAGCAGCAGAGGGAGCTTATGAGAAATGGTTCCGAATCACCCCCCAGCAATGGTCCAGCCCCAATAATGTCTCCACGTGACGCAGCCGCCCTTAGCGCTATCGACGTCTCCCGCCTCACCCTGTGGTCGCTCTACAATAATAACAACAACAATAGCCCACAACCGGACCTTGAGCCCCAACGCGAGGCTCTGAACCTGAGCGAGAGCCCTAACTCGCAGACGAGCGGCGGCAAGCGCGAGGCGTGCCGatcgcccgcgccgcccgccaagCGACGTACGCCACGACCCGCCTCGCGGCCCGCCAGCCCGCGCACCGACCCGCGCGACCTGCACTCGCCGCCCGCGCACCGCCACAGTCGCCGGGACGCCACGTCGCCGCCACAGATCAATGGCATGCCCAATACCAATGGAGTCAATGGAGCAGCTTTCAAAATTACCACCAGAGGAGATGCGAGCACAGGTGACCAGCAGCTCGTGGTGTCCATAGAGCTGAACGGCGTCACGTATGAAGGCGTACTCTTCCCCTCCGGTAACGGTCAGAACGGACACAGACAAATGGTGTCCTAA
- Protein Sequence
- MRCDLARSPCCPLDACCPSTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPPLNRVPASLAQLSQHMQPLSLSLGGVAPRLPPLPPHAPHIAQHDIEYRVREYMKMIQQQRELMRNGSESPPSNGPAPIMSPRDAAALSAIDVSRLTLWSLYNNNNNNSPQPDLEPQREALNLSESPNSQTSGGKREACRSPAPPAKRRTPRPASRPASPRTDPRDLHSPPAHRHSRRDATSPPQINGMPNTNGVNGAAFKITTRGDASTGDQQLVVSIELNGVTYEGVLFPSGNGQNGHRQMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01029938;
- 90% Identity
- iTF_01025756;
- 80% Identity
- -