Anig026765.1
Basic Information
- Insect
- Aporophyla nigra
- Gene Symbol
- retn
- Assembly
- GCA_947507805.1
- Location
- OX382306.1:15662882-15668341[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-19 4e-16 59.8 0.0 16 89 11 82 4 82 0.93 2 2 3.7 1.3e+04 -2.7 0.0 25 38 228 241 190 243 0.58
Sequence Information
- Coding Sequence
- ATGTTGGTGGATTATCGTAGACCAAAAAAATTAAGCACTCCAATCAACCGGCTACCGATAATGGCGAAGTCGGTGCTAGACCTGTATGAGCTGTACAACCTGGTGATAGCTCGCGGGGGGCTGGTGGAGGTCATCAACAAGAAGCTGTGGCAGGAGATCATTAAGGGATTACGGCTGCCATCGTCCATCACGTCTGCTGCCTTCACGTTACGTACACAATACATGAAATACCTGTATGACTACGAGTGCGAGAAGAAGAACCTTTCAACCAGGAGCGAGCTGGACGCAGCCATTGAAGGCAACAAGCGTGAGGGTCGCCGCGCATCAGGACAGTACGACGCACAGGCGGCTTTAGCTATGAATAGATCAGCTGGTGACTGGCCATCATCACGTAACGTCCCCGTCTTCTTGCAGCCCCCACTAAACCGCGTGCCCGCGTCTCTCGCGCAGCTATCGCAGCACATGCAGCCGTTGTCGCTGTCGCTTGGTGGTGTCGCACCACGTCTGCCACCACTGCCACCACACGCGCCGCATCTCGCGCAACACGACATCGAGTACAGGGTGCGCGAGTATATGAAGATGATACAGCAGCAGAGGGAGCTAATGAGAAATGGCTCCGAATCGCCCCCAAGCAATGGTCCTGCTCCAATAATGTCTCCTCGGGACGCAGCCGCCCTCAGTGCCATCGACGTCTCCCGCCTCACTCTCTGGTCGCTCTACAACAATAACAACAACAACAGCCCACAACCCGACCTCGAGCCACAACGCGAGGCTCTGAACCTGAGCGAGAGCCCCAACTCGCTAACGAGCGGCGGCAAGCGCGAGGCGTGCCGCTCGCCCGCGCCGCCCGCCAAGCGCCGCACGCCGCGCCCCGCGTCGCGCCCCGCCTCGCCGCACTCGCCGCCGCAGCACCGCCACAGCCGCAGGGACGCCACCTCACCGCCACAGATCAACGGCATGCCCAACACCAACGGTGTCAATGGAGCTGCCTTCAAGATTACTACCAGAGGAGACGCGAGCACAGGTGACCAGCAACTGGTAGTATCAATAGAGCTGAACGGAGTAACGTATGAAGGAGTACTCTTTCCCTCAGGCAACGGTCCGAATGGACACAGACAAATGGTGTCTTAA
- Protein Sequence
- MLVDYRRPKKLSTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMNRSAGDWPSSRNVPVFLQPPLNRVPASLAQLSQHMQPLSLSLGGVAPRLPPLPPHAPHLAQHDIEYRVREYMKMIQQQRELMRNGSESPPSNGPAPIMSPRDAAALSAIDVSRLTLWSLYNNNNNNSPQPDLEPQREALNLSESPNSLTSGGKREACRSPAPPAKRRTPRPASRPASPHSPPQHRHSRRDATSPPQINGMPNTNGVNGAAFKITTRGDASTGDQQLVVSIELNGVTYEGVLFPSGNGPNGHRQMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01029938;
- 90% Identity
- iTF_01025756;
- 80% Identity
- -