Atur039078.1
Basic Information
- Insect
- Apotomis turbidana
- Gene Symbol
- retn
- Assembly
- GCA_905147355.1
- Location
- LR990297.1:12274766-12280957[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8e-20 4.7e-16 60.6 0.0 17 89 17 87 13 87 0.95 2 2 8.9 5.2e+04 -3.6 0.0 25 38 215 228 198 229 0.74
Sequence Information
- Coding Sequence
- ATGCTCGCTCATCAAACGATCGATGCCGGGGCGACAGACGATGTCGACGGCACACCAATAAACCGGCTGCCCATAATGGCGAAGTCGGTGCTGGACCTGTACGAGCTGTACAACCTGGTGATCGCGCGGGGAGGCCTGGTCGAGGTGATCAACAAGAAGCTGTGGCAGGAGATCATCAAGGGACTTCGGCTGCCTTCTTCCATAACCTCCGCTGCCTTCACTCTGCGCACACAATACATGAAGTACCTGTATGACTACGAGTGCGAGAAGAAGAACCTGTCGACCCGTAGCGAGTTGGACGCCGCCATTGAAGGCAACAAGCGCGAGGGCCGCCGCGCCTCCGGCCAGTACGACGCGCAAGCTGCTTTGGCAATGCCCCCCCTCAACCGGGTGCCGGCGTCGCTCGCGCAGCTGTCCCAGCACATGCAGCCCCTCTCGCTCTCACTCGGAGGTGGAGTTCCTCGTCTACCGCCACTGCCGCCACATGCACCACATCTCTCACAACATGATATCGAGTATCGTGTCCGGGAATATATGAAGATGATTCAGACGCAGCGGGAGCTGATGAGGAATGGTTCGGAATCGCCTCCTGGCTCCGGGCCTACCCCGATGATGTCGCCCCGAGATGCCGCCGCTCTCAGCGCTATCGACGTCTCCCGGCTGACGTTGTGGTCGCtttacaacaacaacaataacaGCCCCCAGCCCGACCTCGAGCCACAACGCGAGGCCCTGAACCTGAGCGAGAGCCCCAACTCGTCCCTAACCGGCATCAAGCGCGAAGCGTGCCGCTCCCCCCCGCCGCCGGCCAAGCGCCGCACCCCGCGGCCGCCCTCGCCGCGCGCGCCCTCCCCGCCGCGCGCCGGCGCGCTGCCCGACCAGCTCAACGGGAACGGGGTCAACGGGGCGGCTTTCAAGATTACTACCAGAGGAGACGCCAGCACGGGAGACCAACAGCTGGTCGTCTCGATCGAGCTCAACGGCGTCACGTACGAAGGCGTACTCTTCCCCTCACAGAACGCCAGCGGTCAAAACGGCCACAGGCAAATGGTGTCTTAA
- Protein Sequence
- MLAHQTIDAGATDDVDGTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPPLNRVPASLAQLSQHMQPLSLSLGGGVPRLPPLPPHAPHLSQHDIEYRVREYMKMIQTQRELMRNGSESPPGSGPTPMMSPRDAAALSAIDVSRLTLWSLYNNNNNSPQPDLEPQREALNLSESPNSSLTGIKREACRSPPPPAKRRTPRPPSPRAPSPPRAGALPDQLNGNGVNGAAFKITTRGDASTGDQQLVVSIELNGVTYEGVLFPSQNASGQNGHRQMVS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01029938;
- 90% Identity
- iTF_00654018;
- 80% Identity
- iTF_00148268;