Gspa023986.1
Basic Information
- Insect
- Globia sparganii
- Gene Symbol
- retn
- Assembly
- GCA_949316385.1
- Location
- OX438670.1:14596444-14604072[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.5e-20 2.5e-16 60.9 0.0 16 89 15 86 10 86 0.94 2 2 6 1.8e+04 -2.7 0.0 26 38 215 227 176 229 0.56
Sequence Information
- Coding Sequence
- ATGATTAACTGCAGACAGGAAGACGGATTGACAAATAGTCGTTTAGGCACTCCAATCAACCGGCTACCGATAATGGCGAAGTCGGTGCTAGACCTGTATGAGTTATACAACCTGGTGATAGCACGCGGTGGGCTGGTGGAGGTCATCAACAAGAAACTGTGGCAGGAGATCATCAAGGGACTGCGGCTGCCATCGTCCATCACATCTGCTGCTTTTACGTTACGCACACAATACATGAAATACCTGTATGACTACGAGTGTGAGAAGAAGAATCTATCAACTAGGAGCGAGCTGGACGCAGCCATTGAAGGCAACAAGCGTGAGGGTCGCCGCGCATCGGGACAGTACGACGCACAAGCTGCTTTAGCTatgCCCCCACTAAACCGCGTGCCCGCGTCTCTCGCGCAGCTGTCGCAGCACATGCAGCCATTGTCGCTGTCGCTGGGAGGTGTCGCACCACGCTTGCCGCCGTTGCCGCCGCACGCGCCGCACCTCGCACAGCACGACATCGAGTACAGGGTGCGCGAGTACATGAAGATGATACAGCAGCAGAGAGAGCTAATGAGAAATGGCTCCGAATCACCCCCTAGCAATGGTCCTGCTCCTATAATGTCTCCTCGCGACGCAGCCGCCCTCAATGCTATTGACGTGTCCCGCCTCACTCTCTGGTCGCTCTacaacaataacaataacaacaGCCCACAACCCGACCTCGAGCCACAACGCGAGGCTCTGAACCTGAGCGAGAGCCCCAACTCTCTGACGAGCGGCGGCAAGCGCGAGGCGTGCCgctcgcccgcgccgcccgccaagcgccgcacgccgcgcccGCTGTCGCGGCCCCCCTCCCCGCGCTCAGAGCACTCGCCGCCGCAGCAACTCCACAGCCGCAGGGACGCCACGTCGCCGCCACAGATCAACGGCATGCCCAATTCCAACGGTGTCAACGGAGCTGCCTTCAAGATTACTACCAGAGGAGATGCGAGCACAGGTGACCAGCAACTGGTAGTATCAATAGAGCTGAACGGAGTAACATATGAAGGAGTACTCTTTCCCTCAGGCAACGGACAGAATGGACACAGACAAATGGTGTCCTAA
- Protein Sequence
- MINCRQEDGLTNSRLGTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPPLNRVPASLAQLSQHMQPLSLSLGGVAPRLPPLPPHAPHLAQHDIEYRVREYMKMIQQQRELMRNGSESPPSNGPAPIMSPRDAAALNAIDVSRLTLWSLYNNNNNNSPQPDLEPQREALNLSESPNSLTSGGKREACRSPAPPAKRRTPRPLSRPPSPRSEHSPPQQLHSRRDATSPPQINGMPNSNGVNGAAFKITTRGDASTGDQQLVVSIELNGVTYEGVLFPSGNGQNGHRQMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01029938;
- 90% Identity
- iTF_01025756;
- 80% Identity
- -