Hzea007314.1
Basic Information
- Insect
- Helicoverpa zea
- Gene Symbol
- retn_1
- Assembly
- GCA_002150865.1
- Location
- KZ118463.1:46465-95423[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.23 5.5e+02 1.1 0.2 4 37 9 40 2 44 0.65 2 3 1.1e-26 2.7e-23 82.3 0.0 1 89 47 133 47 133 0.96 3 3 4.2 9.9e+03 -2.9 0.0 25 38 246 259 208 260 0.57
Sequence Information
- Coding Sequence
- ATGGAATTCATGGATTTCTTCAACACATTCATGgaggatcatcatcatcatcatcagaactCGCACAGCGAGCCTCCGAAGATGCCGAATTTCTTCGAGGTTGATAAGAAAAAGTTGTACGAGATCAGCGATGATCCACAAAGGAAGGAATTCCTGGATGACCTGTTCTCCTTCATGCAAAAGCGAGGCACTCCAATAAACCGGCTACCAATAATGGCGAAGTCAGTACTAGACCTGTATGAGCTTTACAACCTGGTGATTGCTCGCGGAGGCCTGGTGGAAGTCATCAACAAGAAGCTCTGGCAGGAGATCATCAAGGGACTCCGGCTGCCTTCTTCTATCACCTCTGCTGCCTTCACGCTGCGCACACAATACATGAAATACCTGTACGACTATGAGTGTGAGAAGAAGAACCTTTCGACCAGGAGTGAGCTGGACGCGGCTATAGAAGGCAACAAGCGAGAGGGTCGTCGTGCCTCAGGGCAATATGATGCGCAAGCTGCTTTGGCTATGCATATGCAACCGCTGTCGCTGTCGCTCGGGGGCGTGGCGCCGCGACTACCACCGCTGCCGCCGCATGCGCCGCACATCGCGCAACACGACATCGAGTATAGAGTGCGCGAGTATATGAAGATGATTCAGCAGCAGAGGGAGCTTATGAGAAATGGTTCCGAATCCCCCCCCAGCAATGGTCCAGCCCCGATAATGTCACCGCGCGACGCAGCCGCTCTGAGCGCCATCGACGTCTCCCGCTTGACGCTGTGGTCTTTgtataacaacaacaacaacaacagccCGCAACCAGACCTTGAGCCTCAACGTATGGGTTACAGCGAGGCTCTGAACCTAAGCGAGAGCCCCAACTCGCAGACGAGCGGAGGCAAGCGCGAGGCGTGCCGgtcgcccgcgccgcccgccaaGCGCCGCACTCCTCGGCCCGCGACGCCGCCGCACAGCCCGCCGACGCACCGCGCGCGGCGCGACGTCACCTCGCCGCCGCAGCTCAACGGCATGCCCACTAATGGTGTTAATGGTGCTGCCTTCAAAATTACTACCAGAGGAGACGCGAGCACAGGAGACCAGCAGCTGGTGGTGTCCATAGAGCTGAACGGCGTCACGTACGAAGGCGTTCTCTTCCCCTCCGGCAACGGTCAGAACGGCCATAGACAAATGGTCTCCTAA
- Protein Sequence
- MEFMDFFNTFMEDHHHHHQNSHSEPPKMPNFFEVDKKKLYEISDDPQRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMHMQPLSLSLGGVAPRLPPLPPHAPHIAQHDIEYRVREYMKMIQQQRELMRNGSESPPSNGPAPIMSPRDAAALSAIDVSRLTLWSLYNNNNNNSPQPDLEPQRMGYSEALNLSESPNSQTSGGKREACRSPAPPAKRRTPRPATPPHSPPTHRARRDVTSPPQLNGMPTNGVNGAAFKITTRGDASTGDQQLVVSIELNGVTYEGVLFPSGNGQNGHRQMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01029938;
- 90% Identity
- -
- 80% Identity
- -