Clig022157.1
Basic Information
- Insect
- Craniophora ligustri
- Gene Symbol
- retn
- Assembly
- GCA_905163465.1
- Location
- LR990973.1:4706865-4712639[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.3e-20 1.8e-16 61.0 0.0 15 89 11 83 3 83 0.93 2 2 3.9 1.3e+04 -2.7 0.0 25 38 211 224 173 226 0.58
Sequence Information
- Coding Sequence
- ATGCAAAGAAATACACGGTTGAACTATATTAAGCGCTGCACTCCAATCAACCGGCTACCGATAATGGCGAAGTCGGTGCTAGACCTGTATGAGCTGTATAATCTGGTGATAGCCCGCGGTGGCTTGGTGGAGGTGATCAACAAGAAGCTGTGGCAGGAGATCATCAAGGGGCTGCGGCTGCCATCCTCTATCACCTCCGCAGCCTTCACACTACGCACACAATACATGAAATACCTATATGACTATGAGTGCGAGAAGAAGAATCTATCAACCAGGAGTGAACTGGATGCGGCTATTGAAGGCAACAAACGCGAGGGACGCCGCGCCTCGGGGCAATACGATGCTCAGGCTGCTTTAGCTATGCCTCAGCTGAACCGCGTGCCGGCGTCGCTGGCTCAGCTGTCTCAGCACATGCAGCCCTTGTCGTTGTCGCTGGGAGGCGTGGCGCCGCGCCTGCCGCCGCTGCCGCCGCACGCGCCGCACCTGGCGCAACACGACATCGAGTACAGGGTGCGCGAGTACATGAAGATGATACAGCAACAGAGGGAGCTCATGAGAAATGGTTCCGAGTCTCCTCCTAGCAACGGCCCAGCGCCGATAATGTCCCCACGCGACGCAGCCGCCCTCAGCGCTATCGACGTGTCCCGCCTCACTCTCTGGTCTCTGTACAACAATAACAACAACAACAGCCCACAACCGGACCTCGAGCCACAACGCGAGGCTCTGAACTTGAGCGAGAGCCCCAACTCGCTGACGAGCGGCGGCAAGCGCGAGGCGTGCCGCTCGCCCGCGCCGCCCGCCAAGCGCCGCACGCCGCGCCCCGCCTCGCCGCGCGCCGACCTGCACTCGCCGCCGCCGCGCCACGCCCGGCGGGACGTCGCCTCGCCGCCGCAGATCAACGGGGTGCCCAACACTAATGGAGTCAATGGAGCCGCCTTCAAAATTACCACCAGAGGTGACGCGAGCACAGGTGACCAGCAATTAGTGGTATCGATAGAGCTAAATGGTGTAACGTACGAAGGTGTACTCTTCCCCTCCGGCAACGGCCAGAACGGGCACAGGCAAATGGTGTCCTAA
- Protein Sequence
- MQRNTRLNYIKRCTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPQLNRVPASLAQLSQHMQPLSLSLGGVAPRLPPLPPHAPHLAQHDIEYRVREYMKMIQQQRELMRNGSESPPSNGPAPIMSPRDAAALSAIDVSRLTLWSLYNNNNNNSPQPDLEPQREALNLSESPNSLTSGGKREACRSPAPPAKRRTPRPASPRADLHSPPPRHARRDVASPPQINGVPNTNGVNGAAFKITTRGDASTGDQQLVVSIELNGVTYEGVLFPSGNGQNGHRQMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01029938;
- 90% Identity
- iTF_01025756;
- 80% Identity
- -