Aips016974.1
Basic Information
- Insect
- Agrotis ipsilon
- Gene Symbol
- retn
- Assembly
- GCA_028554685.1
- Location
- CM052971.1:6502011-6509312[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.8e-20 2.3e-16 60.9 0.0 16 89 15 86 10 86 0.94 2 2 4 1.2e+04 -2.3 0.0 25 38 213 226 175 229 0.55
Sequence Information
- Coding Sequence
- ATGATTAACTGCAGACAGGAAGACGGATTGACAAATAGTCGTTTAGGCACTCCAATAAACCGACTACCAATAATGGCGAAGTCGGTGCTGGACCTGTATGAGCTGTACAACCTGGTAATAGCTCGCGGCGGGTTGGTGGAGGTCATCAACAAGAAGTTGTGGCAGGAAATCATCAAGGGGTTACGGCTCCCTTCTTCCATCACGTCTGCTGCCTTCACGTTACGCACACAATACATGAAGTACCTGTATGATTACGAGTGCGAGAAGAAAAACCTATCAACCAGGAGTGAGCTGGACGCTGCCATTGAAGGCAACAAGCGTGAGGGACGTCGCGCCTCTGGACAGTACGACGCACAAGCTGCTTTAGCTATGCCCCCACTAAACCGCGTGCCCGCGTCTCTCGCGCAGCTGTCGCAGCACATGCAGCCTTTGTCGCTGTCACTGGGGGGCGTAGCCCCGAGGCTGCCACCACTACCACCGCACGCGCCGCACCTGGCTCAACACGATATTGAGTACAGGGTGCGCGAGTACATGAAGATGATCCAGCAGCAGAGGGAGCTTATGAGAAATGGCTCCGAATCACCTCCCAGCAACGGACAAGCGCCAATAATGTCACCTCGCGACGCCGCCCTCAGTGCCATAGACGTGTCCCGCCTCACGCTCTGGTCTCTCTAcaacaataacaacaacaacagccCGCAACCCGACCTTGAGCCGCAACGCGAGGCTCTGAACCTGAGCGAGAGCCCCAACTCTCTGACGAGCGGCGGCAAGCGCGAGGCGTGTCGctcgcccgcgccgcccgccaaGCGCCGCACGCCGCGGCCGACCTCGCGCCCCGCCTCGCCCCGCGACCACCTGCACTCGCCGCAGCACCGCCACAGCCGCAGGGACACCACGTCGCCGCCGCAGATCAACGGCATGCCCAACACTAATGGTGTCAATGGAGCTGCTTTCAAGATTACCACTAGAGGAGACGCGAGCACAGGTGACCAACAACTAGTGGTATCAATAGAGCTGAACGGAGTAACGTATGAAGGAGTACTTTTCCCCTCAGGCAACGGGCAGAACGGACACAGACAAATGGTGTCCTAA
- Protein Sequence
- MINCRQEDGLTNSRLGTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPPLNRVPASLAQLSQHMQPLSLSLGGVAPRLPPLPPHAPHLAQHDIEYRVREYMKMIQQQRELMRNGSESPPSNGQAPIMSPRDAALSAIDVSRLTLWSLYNNNNNNSPQPDLEPQREALNLSESPNSLTSGGKREACRSPAPPAKRRTPRPTSRPASPRDHLHSPQHRHSRRDTTSPPQINGMPNTNGVNGAAFKITTRGDASTGDQQLVVSIELNGVTYEGVLFPSGNGQNGHRQMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01029938;
- 90% Identity
- iTF_01025756;
- 80% Identity
- -