Dsac022459.1
Basic Information
- Insect
- Diatraea saccharalis
- Gene Symbol
- retn_1
- Assembly
- GCA_014843785.1
- Location
- JACGTY010000003.1:1275-11300[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.8e-19 6.8e-16 59.1 0.0 17 89 42 112 37 112 0.93
Sequence Information
- Coding Sequence
- ATGGAGGATTATGGCCCGTTCTCCTTAACCATTCATAAGAGGCCCTCATATGATTCATCATATGAGGGCCTGCGGTGCGGTGGCGGAGTTACTTTGTATCCCATAATTCCGACAAATAGTATCCGCACTCCTATCAACAGATTACCGATCATGGCCAAATCTGTTCTAGATCTCTATGAATTGTACAACCTCGTGATAGCTCGTGGGGGTCTTGTGGAGGTTATTAACAAGAAGCTTTGGCAAGAAATAATCAAAGGTCTCAGACTGCCTTCGTCTATTACATCAGCTGCTTTCACACTTCGCACACAGTATATGAAGTATCTGTACGATTACGAATGTGAGAAAAAGAATCTATCGACCAGGAGTGAGCTGGACGCTGCCATAGAAGGAAACAAGAGAGAAGGCAGGCGCGCCTCCGGACAGTATGACGCTCAAGCGGCTCTAGCTATGCCTCCGCTGAACCGCGTGCCAGCTTCGCTAGCACAACTGTCACAACATATGCAGCCGCTGTCTCTGTCACTTGGTGGTGTGCCCAGACTACCTCCGATACCGCCGCATGCGCCACACATCTCCCAGCACGATATAGAATACCGCGTGAGGGAATACATGAAGATGATCCAGCAACAACGGGAGCTCATGAGGAACGGTTCCGAATCACCTCCAGGATCGAACGGTCCCGCTCCTATAATGTCTCCCCGCGACGCCGCTGCCCTCAGTGCCATTGATGTGTCCCGACTGACCCTTTGGTCCCTCTATAATAACAACAACAACAGTCCACAGCCAGAATTAGAGCCACAACGGTATGTGTCTAGCGAGGCTTTAAACCTCAGTGAGAGTCCAAACTCCAGTACAAGTGGTGGCAAGCGTGAAGCGTGCCGCTCCCCTCCTCCCCCCGCTAAGCGACGCACCCCCCGGCCGCCCTCGCCCCGCGCGCCCTCTCCTCCCCGCTGCCTGCCGCCAACGCAAGTCAACGGGAGTGTACCGCCTAACGGGGTTAACGGGGCCGCATTCAAAATCACCACAAAAGGCGATGCAAGCACAGGCGATCAACAACTAGACGTCTCTATAGAATTAAATGGAGTCACATACGAAGGAGTGTTATTCCCAACCAATGGGAAAGGAAATGGCAATGGACAGAATGGCAGTGGGCAGAATGGCCACAGGCAAATGGTATCTTAA
- Protein Sequence
- MEDYGPFSLTIHKRPSYDSSYEGLRCGGGVTLYPIIPTNSIRTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPPLNRVPASLAQLSQHMQPLSLSLGGVPRLPPIPPHAPHISQHDIEYRVREYMKMIQQQRELMRNGSESPPGSNGPAPIMSPRDAAALSAIDVSRLTLWSLYNNNNNSPQPELEPQRYVSSEALNLSESPNSSTSGGKREACRSPPPPAKRRTPRPPSPRAPSPPRCLPPTQVNGSVPPNGVNGAAFKITTKGDASTGDQQLDVSIELNGVTYEGVLFPTNGKGNGNGQNGSGQNGHRQMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01029938;
- 90% Identity
- iTF_00006076;
- 80% Identity
- -