Lole024972.2
Basic Information
- Insect
- Lacanobia oleracea
- Gene Symbol
- retn
- Assembly
- GCA_950371165.1
- Location
- OX493399.1:17059863-17067621[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.5e-20 4.8e-16 60.4 0.0 17 89 3 73 1 73 0.95 2 2 3.3 1.9e+04 -2.4 0.0 25 38 199 212 162 215 0.60
Sequence Information
- Coding Sequence
- ATGGCAGGTACTCCAATCAATCGGCTACCGATAATGGCGAAGTCGGTGCTGGACTTGTACGAGCTCTATAACCTGGTGATCGCTCGTGGCGGACTGGTAGAGGTCATCAACAAAAAGTTGTGGCAGGAGATCATCAAGGGATTGCGGCTGCCATCGTCCATCACGTCAGCTGCATTCACATTACGCACACAATACATGAAATACCTGTATGACTACGAGTGCGAGAAGAAGAACCTATCAACCAGGAGCGAGTTGGATGCAGCCATCGAAGGCAACAAGCGCGAGGGGCGCCGTGCCTCGGGACAGTACGACGCGCAAGCTGCCTTAGCCCTGCCCCCACTAAACCGCGTGCCCGCGTCTCTCGCGCAGCTGTCGCAGCACATGCAGCCGCTGTCGCTGTCGCTGGGCGGGGTCGCGCCGCGcctgccgccgctgccgccgcacGCGCCGCACCTCGCGCAGCACGACATCGAGTACAGGGTACGCGAGTATATGAAGATGATTCAGCAGCAGAGGGAGCTTATGAGAAATGGTTCCGAATCGCCCCCCAGCAATGGTCCAGGGTCAATCATGTCACCTCGCGATGCCCTTAGTGCCATCGACGTCTCTCGCCTCACACTCTGGTCGCTCtacaataacaacaataacaacagcCCACAACCGGACCTTGAGCCACAACgCGAGGCTCTGAACTTGAGCGAGAGCCCCACGTCCGTGAGCGGCGTGAAGCGCGAGGCGTGCcgctcgcccgcgccgccgcccgccaaGCGCCGCACGCCGCGCCCCGCCAGCCGCCCCGCCTCGCCGCGCAGCGACCTGCACTCGCCGCCGCAGCACCGCCACAGCCGCAGGGACGCCGCCTCGCCGCCACAAGTCAACGGCATGCCCAGTACCAATGGAGTCAATGGAGCTGCCTTCAAGATCACTACTAGAGGAGACGCAGCGACAGGAGACCAACAGCTAGTAGTATCCATAGAGCTAAACGGAGTAACATATGAAGGAGTTTTATTCCCCTCAGGCAACGGCCAGAACGGACACAGACAAATGGTGTCctaa
- Protein Sequence
- MAGTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALALPPLNRVPASLAQLSQHMQPLSLSLGGVAPRLPPLPPHAPHLAQHDIEYRVREYMKMIQQQRELMRNGSESPPSNGPGSIMSPRDALSAIDVSRLTLWSLYNNNNNNSPQPDLEPQREALNLSESPTSVSGVKREACRSPAPPPAKRRTPRPASRPASPRSDLHSPPQHRHSRRDAASPPQVNGMPSTNGVNGAAFKITTRGDAATGDQQLVVSIELNGVTYEGVLFPSGNGQNGHRQMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01029938;
- 90% Identity
- iTF_01025756;
- 80% Identity
- -