Pcas018121.1
Basic Information
- Insect
- Polylopha cassiicola
- Gene Symbol
- retn
- Assembly
- GCA_038024825.1
- Location
- CP149060.1:6559689-6564937[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.5e-19 6.6e-16 58.9 0.0 18 89 17 86 13 86 0.94 2 2 8.9 2.4e+04 -3.8 0.0 26 38 222 234 208 235 0.73
Sequence Information
- Coding Sequence
- ATGCGATGCGATTTAGCACGCTCGCCGAGTTTACGGCCCTTACCAAGCACTCCAATAAACCGGCTGCCTATAATGGCAAAGTCGGTGCTCGATTTGTATGAACTGTACAACCTGGTGATCGCCCGCGGGGGGCTGGTCGAGGTGATCAACAAGAAGCTGTGGCAGGAGATCATCAAGGGACTGAGACTGCCTTCCTCTATCACCTCCGCAGCATTCACACTACGCACGCAATACATGAAATACCTCTATGACTATGAGTGCGAGAAGAAAAACCTGTCAACGCGCAGCGAGCTGGACGCGGCAATAGAAGGCAACAAGCGGGAGGGGCGGCGAGCGTCCGGCCAGTACGATGCGCAAGCGGCGCTCGCAATGTCATGCTTCACTCCATTCCAGCCGCCGCACCGCGTGCCGGCATCGCTGGCGCAGCTGTCGCAGCACATGCAGCCGCTCTCTCTGTCCCTCGGCGGCGCAGGAGTGCCCCGGCTgccgccgctgccgccgcACGCGCCGCACATCTCACAACACGACATCGAGTACAGAGTGCGGGAGTACATGAAGATGATACAGCAGCAAAGGGAGATATTGAGGAATGGTTCTGAATCTCCTCCGGGCTCGGGTCCCACTCCGATGATGTCGCCCCGTGACGCAGCCGCCCTCAGCGCCATCGACGTCTCTCGCCTCACTCTCTGGTCCCtgtacaacaacaacaacaacagcCCGCAGCCAGACCTTGAACCACAACGCGAGGCACTAAACCTAAGCGAGAGTCCCAACTCCTCAATCAGCGTGAAGCGCGAGGCGTGCCGGTCTCCCCCCCCTCCGGCCAAGCGCCGCACGCCGCGCCCCCCCTCGCCGCGCGCACCCTCCCCCCCTCGCCCCGCCAGTCTACCCCCCCAACATGCTCTCAATGGAGGGAACGGCGTGAATGGCGCTGCGTTCAAGATTACTACAAGAGGTGATGCAAACACGGGTGACCAGCAACTAGTGGTGTCCATAGAACTAAACGGAGTGACATACGAGGGTGTCCTCTTCCCTTCACAGAACGCGGGACAGAACGGCCACAGGCAAATGGTTTCCTAA
- Protein Sequence
- MRCDLARSPSLRPLPSTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMSCFTPFQPPHRVPASLAQLSQHMQPLSLSLGGAGVPRLPPLPPHAPHISQHDIEYRVREYMKMIQQQREILRNGSESPPGSGPTPMMSPRDAAALSAIDVSRLTLWSLYNNNNNSPQPDLEPQREALNLSESPNSSISVKREACRSPPPPAKRRTPRPPSPRAPSPPRPASLPPQHALNGGNGVNGAAFKITTRGDANTGDQQLVVSIELNGVTYEGVLFPSQNAGQNGHRQMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01029938;
- 90% Identity
- iTF_00654018;
- 80% Identity
- -