Tjac023771.2
Basic Information
- Insect
- Tyria jacobaeae
- Gene Symbol
- retn
- Assembly
- GCA_947561695.1
- Location
- OX387224.1:7171397-7181056[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.3e-20 1.7e-16 60.9 0.0 16 89 15 86 10 86 0.94 2 2 5 1.2e+04 -2.7 0.0 25 37 216 228 177 230 0.53
Sequence Information
- Coding Sequence
- ATGATTAAGTGCAGACAGGAAGACGGATTGACAAATAGTCGTTTAGGAACACCTATCAACCGGTTGCCAATCATGGCTAAGTCTGTATTAGACCTGTATGAGCTGTATAACTTGGTGATTGCTCGCGGAGGCCTGGTAGAAGTAATTAACAAGAAACTCTGGCAGGAAATAATTAAGGGATTAAGACTGCCATCGTCAATCACGTCGGCGGCATTCACGTTGCGCACACAGTATATGAAGTACTTGTACGACTACGAGTGTGAGAAGAAGAACCTTTCTACGCGGAGTGAGTTGGACGCCGCGATTGAAGGTAACAAGCGGGAGGGGAGGCGTGCTTCGGGACAGTACGATGCACAAGCAGCTTTAGCTATGCCGCCTCTGAACCGTGGCATGCCTGCGTCACTAGCGCAACTCTCACAACACATGCAGCCTCTGTCCCTCTCTCTCGGTGGTGTGGCGCCACGTTTGCCACCGCTTCCACCGCACGCACCACATTTGGCGCAACATGACATTGAATTCAGGGTACGAGAGTATATGAAGATGATTCAGCAGCAGAGGGAGCTGATGAGAAATGGTTCCGAGTCTCCCCCAAGTGTGAACGGTCCAGCGCCGATAATGTCACCTCGTGATGCGGCAGCTCTCAGCGCCATCGACGTGTCTCGCCTCACTCTTTGGTCGCTATACAATAACAACAATAACAATAGTCCACAGCCTGATCTTGAACCACAACGCGAGGCATTAAACCTGAGCGAGAGCCCGAACTCTAGTGCATCAGGAGGTAAGCGTGAGGCCTGCCGATCGCCGGCACCACCTGCGAAAAGGCGAACGCCGAGGCCAGCGTCGCCTCGTGCCTCGCCTCCTTCACCTGCGTTATTGCCCATGGCTCGCGCCTCACGCCTCGAGGCGCCGTCCCCGCCGCATGCGCTCAACGGACCCAGCTCCAATGGAGTCAATGGAGCTGCCTTCAAGATCACCACTAGAGGTGATGCCAGCACAGGTGATCAGCAGCTGGTAGTGTCAATAGAACTGAACGGTGTCACGTATGAGGGCGTGCTGTTCCCCGCCAATAACTCACAGAATGGACACAGGCAAATGGTGTCTTAA
- Protein Sequence
- MIKCRQEDGLTNSRLGTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPPLNRGMPASLAQLSQHMQPLSLSLGGVAPRLPPLPPHAPHLAQHDIEFRVREYMKMIQQQRELMRNGSESPPSVNGPAPIMSPRDAAALSAIDVSRLTLWSLYNNNNNNSPQPDLEPQREALNLSESPNSSASGGKREACRSPAPPAKRRTPRPASPRASPPSPALLPMARASRLEAPSPPHALNGPSSNGVNGAAFKITTRGDASTGDQQLVVSIELNGVTYEGVLFPANNSQNGHRQMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01029938;
- 90% Identity
- iTF_00677326;
- 80% Identity
- -