Mimp038888.2
Basic Information
- Insect
- Mythimna impura
- Gene Symbol
- retn
- Assembly
- GCA_905147345.1
- Location
- LR990358.1:18580530-18586274[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2e-19 8.3e-16 60.0 0.0 17 89 16 86 11 86 0.95 2 2 7.2 2.9e+04 -2.7 0.0 25 38 214 227 176 229 0.58
Sequence Information
- Coding Sequence
- ATGTTCTTATTACCATTGCGGTGGTTGTTAAGTTATCcttatatagGTACTCCAATCAACCGGCTACCTATAATGGCGAAGTCAGTGCTGGACCTGTACGAGTTGTACAACTTGGTGATCGCACGCGGTGGCCTGGTGGAGGTGATCAACAAGAAGCTGTGGCAAGAGATTATCAAGGGGCTGCGACTGCCGTCCTCCATCACCTCGGCTGCCTTCACATTACGCACACAATATATGAAATACCTGTATGACTATGAGTGCGAGAAGAAAAACCTATCAACCAGGAGCGAGCTGGACGCAGCTATAGAAGGCAACAAGCGTGAGGGACGCCGCGCATCGGGACAATATGACGCACAAGCTGCACTAGCTATGCCCCCACTAAACCGCGTGCCCGCGTCTCTCGCGCAGTTGTCGCAGCACATGCAGCCACTGTCACTGTCCCTCGGGGGCGTAGCACCCCGCCtgccgccgctgccgccgcACGCGCCGCATCTCGCGCAGCACGATATCGAGTATAGGGTGCGCGAATACATGAAGATGATACAGCAGCAGAGAGAGCTTATGAGAAATGGCTCCGAATCACCTCCCAGCAATGGTCCAGCACCAATAATGTCACCCCGCGATGCAGCCGCCCTCAGTGCTATCGATGTCTCCCGTCTCACTCTCTGGTCGCTCtacaacaataacaataacaacagtCCACAACCGGACCTTGAGCCACAACGCGAGGCTCTGAACCTGAGCGAGAGCCCCAACTCGCTGACGTCGGGCGGCAAGCGCGAGGCGTGCCGCtcgcccgcgccgcccgccaAGCGCCGCACGCCGCGGCCCGCGTCGCGCCCCGCCTCGCCGCGCGCAGACCTGCCCTCGCCGCCGCAGCACCGCCACAGCCGCAGGGACGTCACCTCACCGCCGCAGATCAACGGCATGCCCAATACCAATGGTGTTAATGGAGCTGCTTTCAAAATCACTACCAGAGGAGACGCGAGCACAGGAGACCAGCAGCTAGTAGTGTCAATAGAGCTGAACGGAGTCACCTATGAAGGAGTACTTTTCCCCTCAGGAAATGGTCAGAACGGACACAGACAAATGGTGtcttaa
- Protein Sequence
- MFLLPLRWLLSYPYIGTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPPLNRVPASLAQLSQHMQPLSLSLGGVAPRLPPLPPHAPHLAQHDIEYRVREYMKMIQQQRELMRNGSESPPSNGPAPIMSPRDAAALSAIDVSRLTLWSLYNNNNNNSPQPDLEPQREALNLSESPNSLTSGGKREACRSPAPPAKRRTPRPASRPASPRADLPSPPQHRHSRRDVTSPPQINGMPNTNGVNGAAFKITTRGDASTGDQQLVVSIELNGVTYEGVLFPSGNGQNGHRQMVS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01029938;
- 90% Identity
- iTF_00040577; iTF_00042414; iTF_00042415; iTF_00041562; iTF_00425153; iTF_01061665; iTF_00363812; iTF_00830948; iTF_00237249; iTF_01030916; iTF_01440772; iTF_01439676; iTF_00850376; iTF_00905896; iTF_00383401; iTF_01029001; iTF_00771658; iTF_00299932; iTF_00973504; iTF_01062538; iTF_01028043; iTF_00887998; iTF_01076171; iTF_01532811; iTF_00445893; iTF_01534577; iTF_00685214; iTF_01424831; iTF_00017964; iTF_01377253; iTF_01259863; iTF_01342004; iTF_00017127; iTF_00072049; iTF_01063533; iTF_00851502; iTF_00120273; iTF_01285329; iTF_00171539; iTF_00124020; iTF_00122137; iTF_00121178; iTF_00123133; iTF_00446900; iTF_00808884; iTF_01246612; iTF_00147085; iTF_01361364; iTF_01362280; iTF_01027083; iTF_01029938; iTF_00036405; iTF_00038477; iTF_01084918; iTF_01531748; iTF_00711597; iTF_00928442; iTF_01084029; iTF_01064416; iTF_01192406; iTF_00373688; iTF_00374954; iTF_00448800; iTF_00784984; iTF_00783209; iTF_00951576; iTF_01533720; iTF_00037561; iTF_01092846; iTF_00745410; iTF_00924373; iTF_01094680; iTF_01093820; iTF_00757920; iTF_00300953; iTF_00176890; iTF_00809841; iTF_00273394; iTF_00274232; iTF_00906842; iTF_00622596; iTF_00907663; iTF_01526800; iTF_01525714; iTF_00172512; iTF_00301884; iTF_00444892; iTF_01538525; iTF_00043264; iTF_00039577;
- 80% Identity
- -