Ctra029487.2
Basic Information
- Insect
- Cosmia trapezina
- Gene Symbol
- retn
- Assembly
- GCA_905163495.1
- Location
- LR991036.1:9009608-9017240[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.9e-21 1.3e-17 65.5 0.0 13 89 1 75 1 75 0.96 2 2 5.2 2.3e+04 -2.7 0.0 25 38 203 216 165 218 0.57
Sequence Information
- Coding Sequence
- ATGAAGAGCAGAGGCACTCCAATCAACCGGCTACCGATAATGGCGAAGTCGGTATTAGACCTATATGAGCTGTACAACTTAGTGATAGCTCGCGGCGGGCTGGTGGAGGTCATCAACAAGAAGCTGTGGCAGGAGATCATCAAGGGACTGCGGCTGCCGTCGTCCATCACGTCTGCTGCCTTTACGTTACGTACACAGTACATGAAATACTTGTATGACTACGAGTGCGAGAAGAAGAACCTCTCCACCAGGAGTGAGCTGGACGCAGCCATTGAAGGCAACAAGCGTGAGGGTCGCCGGGCGTCTGGACAGTACGACGCACAAGCTGCTTTAGCTATGCCCCCACTAAACCGCGTGCCCGCGTCTCTCGCGCAGCTGTCGCAGCACATGCAGCCGCTGTCGCTGTCGCTGGGGGGTGTCGCGCCGCGCTTGCCGCCGCTGCCGCCGCACGCGCCGCATCTCGCGCAGCACGACATCGAGTACAGGGTACGCGAGTATATGAAGATGATACAGCAGCAGAGGGAGCTTATGAGAAATGGCTCCGAATCACCCCCCAACAATGGCCCAGCACCAATAATGTCACCTCGTGACGCAGCCGCCCTCAGTGCCATTGACGTCTCCCGCCTCACTCTCTGGTCACTctacaacaataacaacaacaacagcccACAACCGGACCTTGAACCACAACGCGAGGCTCTGAACCTGAGCGAGAGCCCCAACTCTCTGTCGAGTGGCGGCAAGCGCGAGGCGTGCCGCTCGCCCGCACCGCCTGCCAAGCGCCGCACGCCGCACCCCGCATCGCGGCCCTGCTCGCCGCGCACCTCCTCGCCGCGCTCTGACCTGCACGAGCCACCACAGCACCGCCACAGCCGCAGGGACGCCACGTCCCCGCCACAGATCAACGGCATGCCCAGTTCCAACGGTGTCAATGGAGCTGCCTTCAAGATTACTACCAGAGGAGACGCGAGCACAGGTGACCAGCAACTGGTCGTGTCAATAGAGCTGAACGGAGTAACGTATGAAGGAGTACTCTTTCCCTCAGGCAACGGTCAAAATGGACACAGACAAATGGTGtcttaa
- Protein Sequence
- MKSRGTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPPLNRVPASLAQLSQHMQPLSLSLGGVAPRLPPLPPHAPHLAQHDIEYRVREYMKMIQQQRELMRNGSESPPNNGPAPIMSPRDAAALSAIDVSRLTLWSLYNNNNNNSPQPDLEPQREALNLSESPNSLSSGGKREACRSPAPPAKRRTPHPASRPCSPRTSSPRSDLHEPPQHRHSRRDATSPPQINGMPSSNGVNGAAFKITTRGDASTGDQQLVVSIELNGVTYEGVLFPSGNGQNGHRQMVS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01029938;
- 90% Identity
- iTF_01025756;
- 80% Identity
- -