Hamb017756.2
Basic Information
- Insect
- Hoplodrina ambigua
- Gene Symbol
- retn_1
- Assembly
- GCA_949774945.1
- Location
- OX458981.1:8763803-8775020[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-20 5.5e-17 62.5 0.0 12 89 55 130 50 130 0.95 2 2 6 1.5e+04 -3.0 0.0 25 38 258 271 220 272 0.57
Sequence Information
- Coding Sequence
- ATGACTGCAGTGAGTGCAGTCACTGTAGTGGGTGATTGCGCCGGGCCGGTGCGCGGGGCGATGGCGGCTGCCACATTGTTGCACCGGATAGGGCCGACCGGCCGCTGTTTTAATGTCTCTCAGACGGAATTACGCTGGATTGTTCTCAACTTTACTGCTCCCTTCATGATTGATCGTTGCACTCCAATCAACCGGCTACCAATAATGGCGAAGTCGGTGTTAGATTTGTATGAGCTGTACAACCTGGTGATTGCTCGCGGAGGGCTAGTAGAGGTGATCAACAAGAAGCTGTGGCAGGAGATCATTAAGGGACTGCGGCTGCCGTCATCCATCACATCTGCTGCCTTCACGTTACGCACACAATACATGAAATACCTGTACGACTATGAGTGTGAGAAGAAAAACCTGTCAACCAGGAGCGAGCTGGATGCAGCCATTGAAGGCAACAAGCGTGAGGGACGTCGAGCTTCCGGACAGTACGACGCACAAGCTGCCTTAGCTATGCCCCCATTAAACCGCGTGCCCGCGTCTCTCGCGCAGCTGTCGCAGCACATGCAGCCGCTGTCGCTGTCACTGGGGGGCGTGGCCCCGCGCTTGCCGCCGCTGCCGCCGCACGCGCCGCACCTAGCACAGCACGACATAGAGTACAGGGTGCGCGAGTACATGAAGATGATACAGCAGCAGAGGGAGCTAATGAGAAATGgTTCTGAATCGCCCCCCAGCAATGGTCCAGCACCAATAATGTCACCCCGTGACGCAGCCGCCCTTAGTGCCATTGACGTCTCCCGCCTCACTCTCTGGTCGCTctacaacaataacaacaacaatagCCCACAACCGGACCTTGAGCCTCAACgCGAGGCTCTAAACCTGAGCGAGAGCCCCAACTCGATGACCAGCGGTGGCAAGCGCGAAGCGTGCCGCtcccccgcgccgcccgccaaGCGCCGTACGCCGCGCCCCCCATCGCGGCCCGCCTCCCCCCGCGACCTGCACTCGCCGCCGCAGCACCACCACAGCCGCCGCGACGCCACGTCACCGCCACAAATCAATGGCATGCCAAATTCCAACGGTGTCAATGGAGCTGCTTTCAAAATCACAACCAGAGGTGACGCGAGCACAGGTGACCAGCAACTGGTAGTGTCAATAGAATTGAACGGCGTCACGTATGAAGGAGTGCTGTTCCCCTCAGGAAACGGTCAGAACGGACACAGACAAATGGTGTCCTAA
- Protein Sequence
- MTAVSAVTVVGDCAGPVRGAMAAATLLHRIGPTGRCFNVSQTELRWIVLNFTAPFMIDRCTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPPLNRVPASLAQLSQHMQPLSLSLGGVAPRLPPLPPHAPHLAQHDIEYRVREYMKMIQQQRELMRNGSESPPSNGPAPIMSPRDAAALSAIDVSRLTLWSLYNNNNNNSPQPDLEPQREALNLSESPNSMTSGGKREACRSPAPPAKRRTPRPPSRPASPRDLHSPPQHHHSRRDATSPPQINGMPNSNGVNGAAFKITTRGDASTGDQQLVVSIELNGVTYEGVLFPSGNGQNGHRQMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01029938;
- 90% Identity
- iTF_01025756;
- 80% Identity
- -