Ppyg001860.1
Basic Information
- Insect
- Protodeltote pygarga
- Gene Symbol
- retn
- Assembly
- GCA_936440985.2
- Location
- CAKZFI020000014.1:683949-690200[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.1e-20 9.5e-17 61.4 0.0 12 89 8 83 3 83 0.92 2 2 4.8 9e+03 -2.7 0.0 25 38 211 224 173 226 0.58
Sequence Information
- Coding Sequence
- ATGAAGTGCGTAGTAAAGGGTTTTACAACTTGCAATAGCACTCCCATAAACCGGTTACCGATCATGGCCAAGTCTGTTCTTGACCTATACGAACTGTATAACCTGGTCATTGCCAGAGGTGGCCTGGTGGAGGTGATCAATAAGAAGCTGTGGCAGGAGATCATCAAGGGTCTCCGGCTACCGTCCTCCATTACCTCAGCTGCATTTACGTTACGCACACAATACATGAAATACCTTTATGATTACGAGTGTGAGAAAAAGAACCTATCGACTCGGAGTGAGTTGGATGCTGCCATTGAAGGCAACAAGCGCGAGGGCCGTCGGGCTTCAGGACAATATGATGCACAAGCCGCGTTAGCTATGCCTCCTTTGAACCGCGTGCCAGCATCATTAGCACAGCTGTCACAGCACATGCAGCCTCTCTCTCTATCACTGGGGGGTGTGGCCCCGCGTCTGCCACCGTTACCGCCGCACGCGCCGCATCTAGGCCAACACGACATTGAATACAGGGTCCGCGAGTACATGAAGATGATACAGCAGCAACGGGAGCTCATgagaaatgGCTCCGAGTCACCTCCCAGCAATGGTCCAGCACCAATAATGTCCCCCCGTGACGCAGCTGCTCTCAGTGCAATCGACGTCTCCCGTCTCACACTCTGGTCACTCTACAACAATAACAACAACAACAGCCCGCAACCAGATCTAGAACCACAACGCGAGGCTTTGAACCTGAGCGAGAGTCCCAACTCAATGACGAGCAGTGGCAAGCGAGAGGCGTGTCGTTCGCCCGCGCCGCCCGCCAAGAGACGCACACCGCGGCCCGCCTCACCGCGCAGCGACCTGCACTCGCCGCCCGCGCACCGTCACGCGCGCAGGGACACCACCTCGCCGCCACAGATCAATGGAGTACCCAATACCAATGGTGTTAATGGTGCTGCCTTCAAAATCACGACAAGAGGTGACGCAACCACAGGAGACCAGCAGTTAGTAGTGTCAATAGAGCTGAATGGAGTCACGTACGAAGGCGTACTTTTTCCCTCAGGAAATGGTCAGAACGGGCACCGGCAAATGGTGTCTTAA
- Protein Sequence
- MKCVVKGFTTCNSTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPPLNRVPASLAQLSQHMQPLSLSLGGVAPRLPPLPPHAPHLGQHDIEYRVREYMKMIQQQRELMRNGSESPPSNGPAPIMSPRDAAALSAIDVSRLTLWSLYNNNNNNSPQPDLEPQREALNLSESPNSMTSSGKREACRSPAPPAKRRTPRPASPRSDLHSPPAHRHARRDTTSPPQINGVPNTNGVNGAAFKITTRGDATTGDQQLVVSIELNGVTYEGVLFPSGNGQNGHRQMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01029938;
- 90% Identity
- iTF_01025756;
- 80% Identity
- -