Sver018255.1
Basic Information
- Insect
- Shargacucullia verbasci
- Gene Symbol
- retn
- Assembly
- GCA_947562105.1
- Location
- OX387297.1:8501628-8514725[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.9e-19 5.3e-16 59.1 0.0 17 89 53 123 46 123 0.94 2 2 5.1 9.3e+03 -2.6 0.0 25 38 251 264 213 269 0.60
Sequence Information
- Coding Sequence
- ATGGCTGATGGGCCGCGCGACCGCACCGCGCCGCATTATCGTGCGCCACCGCCACCGCAGCCGCGATTTTCATTCGTTTCTAATAAATTGATACGAGGGCTACGCGACGCGCCATTGGTCGACTCGCTCCCCGGTCTTCGATCCTCGTACCCTGACCGCACTCCAATCAACCGGCTACCGATAATGGCTAAGTCGGTGTTGGACCTGTACGAGCTGTACAACCTGGTGATAGCACGCGGCGGGCTGGTGGAGGTGATCAACAAGAAGCTGTGGCAGGAGATCATCAAAGGGTTGCGGCTGCCATCGTCCATTACGTCTGCCGCCTTTACGCTACGCACACAGTACATGAAATACCTGTACGACTACGAGTGTGAGAAGAAGAATTTATCAACCAGGAGTGAGCTGGATGCTGCCATCGAGGGCAACAAGCGGGAGGGTCGCCGCGCCTCAGGGCAATACGATGCACAAGCGGCATTATCTATGCCGCCTCTGAACCGCGTGCCCGCGTCGCTTGCGCAACTGTCACAACACATGCAACCTCTATCCCTATCACTGGGTGGAGTGGCCCCACGCCTGCCACCACTCCCGCCGCATGCGCCTCATCTTGCGCAGCACGATATCGAATACCGGGTGCGAGAGTACATGAAGATGATTCAGCAGCAGAGAGAGCTCATGAGAAATGGCTCCGAGTCACCCCCCAGCAATGGTCCAGCGCCGATAATGTCACCTCGCGACGCAGCCGCCCTCAGTGCCATCGATGTGTCCCGGCTCACACTCTGGTCGCTCTACAACAATAACAACAACAACAGCCCACAACCAGACCTCGAGCCACAACGCGAGGCTCTAAACCTGAGCGAGAGCCCCAACTCGGTGACGAGTGGCGGCAAGCGCGAGGCGTGCCGCTCGCCCGCGCCGCCCGCCAAGCGCCGCACGCCGCGCCCCGCCTCCCCCCGCGCCGACCTGCACTCGCCGCCCGCGCACCGGCATGCTCGGCGGGATGCTACGTCGCCGCCACAGATCAATGGACTTCCAAATGCCAATGGTGTGAATGGAGCTGCCTTCAAGATTACTACCAGAGGTGACGCGAGCACAGGTGACCAGCAACTAGTGGTGTCAATAGAGCTGAACGGCGTCACGTACGAAGGCGTACTCTTCCCTTCAGGCAACGGGCAGAATGGACACAGGCAAATGGTGTCCTAA
- Protein Sequence
- MADGPRDRTAPHYRAPPPPQPRFSFVSNKLIRGLRDAPLVDSLPGLRSSYPDRTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALSMPPLNRVPASLAQLSQHMQPLSLSLGGVAPRLPPLPPHAPHLAQHDIEYRVREYMKMIQQQRELMRNGSESPPSNGPAPIMSPRDAAALSAIDVSRLTLWSLYNNNNNNSPQPDLEPQREALNLSESPNSVTSGGKREACRSPAPPAKRRTPRPASPRADLHSPPAHRHARRDATSPPQINGLPNANGVNGAAFKITTRGDASTGDQQLVVSIELNGVTYEGVLFPSGNGQNGHRQMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00809841;
- 90% Identity
- iTF_01025756;
- 80% Identity
- -