Ccla012121.1
Basic Information
- Insect
- Caradrina clavipalpis
- Gene Symbol
- retn_1
- Assembly
- GCA_932526535.1
- Location
- OW052103.1:5551629-5556066[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.6e-20 6.9e-17 61.8 0.0 16 89 5 76 1 76 0.94 2 2 4.8 9.1e+03 -2.6 0.0 25 38 204 217 166 219 0.58
Sequence Information
- Coding Sequence
- ATGAACATAGCTAAAGGCACTCCAATCAACCGGCTACCGATAATGGCGAAGTCGGTGTTAGATTTATACGAGCTGTACAACCTGGTGATAGCTCGCGGGGGCCTTGTGGAGGTGATCAACAAGAAGCTGTGGCAGGAGATCATTAAGGGACTGCGGCTGCCGTCTTCCATCACGTCTGCTGCCTTCACGTTGCGCACACAATACATGAAATACCTGTATGACTATGAGTGCGAGAAGAAGAACCTGTCAACCAGGAGCGAGCTGGACGCAGCCATTGAAGGCAACAAGCGTGAGGGACGTCGCGCCTCAGGGCAGTACGACGCACAAGCTGCTTTAGCTATGCCCCCATTAAACCGCGTGCCCGCGTCTCTCGCGCAGCTGTCGCAGCACATGCAGCCACTGTCGCTGTCCCTGGGGGGCGTGGCCCCGCGCCTGCCGCCGCTGCCGCCGCACGCGCCGCATCTAGCGCAGCACGACATCGAGTACAGGGTGCGCGAGTACATGAAGATGATACAGCAGCAGAGGGAGTTAATGAGAAATGGCTCTGAATCGCCCCCCAGCAACGGTCCAGCGCCAATAATGTCTCCTCGTGACGCAGCCGCCCTTAGTGCCATTGACGTCTCCCGCCTCACTCTCTGGTCACTCTACAACAATAACAACAACAACAGCCCACAACCGGACCTTGAGCCACAACGCGAGGCTCTAAACCTGAGCGAGAGCCCCAACTCGCTGACGAGCGGCGGCAAGCGCGAGGCGTGCCGCTCGCCCGCACCACCCGCCAAGCGCCGCACGCCGCGCCCCCCCTCCCGCCCCGCCTCGCCCCGCGACCTGCACTCGCCGCCACAGCACCGCCACAGCCGCCGCGACGCCACATCACCGCCACAAATCAATGGCATGCCCAATACCAACGGTGTCAATGGGGCTGCTTTCAAAATCACAACCAGAGGTGACGCGAGCACAGGTGACCAGCAACTGGTAGTGTCAATAGAATTGAACGGCGTCACGTATGAAGGAGTTCTGTTCCCCTCAGGAAACGGTCAGAACGGACACAGACAAATGGTGTCCTAA
- Protein Sequence
- MNIAKGTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPPLNRVPASLAQLSQHMQPLSLSLGGVAPRLPPLPPHAPHLAQHDIEYRVREYMKMIQQQRELMRNGSESPPSNGPAPIMSPRDAAALSAIDVSRLTLWSLYNNNNNNSPQPDLEPQREALNLSESPNSLTSGGKREACRSPAPPAKRRTPRPPSRPASPRDLHSPPQHRHSRRDATSPPQINGMPNTNGVNGAAFKITTRGDASTGDQQLVVSIELNGVTYEGVLFPSGNGQNGHRQMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00809841;
- 90% Identity
- iTF_01025756;
- 80% Identity
- -