Alyc022489.2
Basic Information
- Insect
- Agrochola lychnidis
- Gene Symbol
- retn
- Assembly
- GCA_963680765.1
- Location
- OY796860.1:16903485-16908122[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-20 6.7e-17 63.1 0.0 5 89 7 88 5 88 0.92 2 2 6.5 1.9e+04 -2.5 0.0 25 38 216 229 178 234 0.60
Sequence Information
- Coding Sequence
- ATGAACATGTTTCTCCTGTTTGTAAAGACTCTTTTGTTACATTACGATATAGgTACTCCAATCAATCGGCTACCGATAATGGCGAAGTCGGTGCTAGACTTGTACGAGCTATACAACCTGGTGATAGCTCGCGGCGGGCTGGTGGAGGTCATCAATAAGAAGTTGTGGCAAGAGATCATCAAGGGACTGCGGCTGCCATCGTCCATCACGTCTGCTGCCTTCACATTACGTACACAATATATGAAATACCTGTATGACTACGAGTGCGAGAAGAAGAACCTATCAACCAGGAGCGAGCTGGATGCAGCCATTGAAGGGAACAAGCGTGAGGGACGTCGCGCCTCTGGGCAGTATGACGCACAAGCTGCTTTAGCTATGCCCCCACTAAACCGCGTGCCCGCGTCTCTCGCGCAGCTGTCGCAGCACATGCAGCCACTGTCGCTGTCGCTGGGGGGTGTCGCACCGCGgctgccgccgctgccgccgcaTGCACCGCATCTCGCACAGCACGACATCGAGTACAGGGTACGCGAGTATATGAAGATGATACAGCAGCAGAGGGAGCTTATGAGAAATGGCTCCGAGTCGCCCCCCAGCAATGGCCCAGCACCAATAATGTCACCTCGTGACGCAGCCGCCCTCAGTGCCATCGACGTCTCCCGCCTCACTCTCTGGTCACTCTacaacaataataacaacaacagCCCACAACCGGACCTTGAACCACAACGCGAGGCTCTGAACCTGAGCGAGAGCCCCAACTCAGTGACGAGCGGCGGCAAGCGCGAGGCGTGCCgctcgcccgcgccgcccgccaagCGCCGCACGCCGCGCCCCGCCAGCcgccccccctccccctcgcCGCGCGCCGAGCTGCACGAGGCGCAGCACCGCCACAGCCGCAGGGACGCCACGTCGCCGCCACAGATCAACGGTATGCCCAATTCCAACGGTATCAATGGAGCTGCCTTCAAGATTACTACTAGAGGAGACGCAAGCACAGGTGACCAGCAACTGGTAGTGTCAATAGAGCTGAACGGAGTAACATATGAAGGAGTACTCTTTCCGTCAGGCAACGGTCAAAATGGACACAGACAAATGGTGtcttaa
- Protein Sequence
- MNMFLLFVKTLLLHYDIGTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPPLNRVPASLAQLSQHMQPLSLSLGGVAPRLPPLPPHAPHLAQHDIEYRVREYMKMIQQQRELMRNGSESPPSNGPAPIMSPRDAAALSAIDVSRLTLWSLYNNNNNNSPQPDLEPQREALNLSESPNSVTSGGKREACRSPAPPAKRRTPRPASRPPSPSPRAELHEAQHRHSRRDATSPPQINGMPNSNGINGAAFKITTRGDASTGDQQLVVSIELNGVTYEGVLFPSGNGQNGHRQMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00809841;
- 90% Identity
- iTF_01025756;
- 80% Identity
- -