Mbra019649.1
Basic Information
- Insect
- Mamestra brassicae
- Gene Symbol
- retn
- Assembly
- GCA_905163435.1
- Location
- LR991006.1:11977128-11982271[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.8e-19 1e-15 58.6 0.0 18 89 9 78 4 78 0.94 2 2 4.8 1.3e+04 -2.7 0.0 25 38 206 219 168 221 0.58
Sequence Information
- Coding Sequence
- ATGTACTTGTTCCCTCGTGTTTGCACTCCAATCAACCGGCTACCGATAATGGCGAAGTCAGTGCTGGATCTGTATGAGCTTTACAACCTGGTGATTGCTCGCGGCGGCTTGGTGGAAGTCATCAACAAGAAGTTGTGGCAGGAGATCATCAAGGGGCTGCGGCTGCCGTCGTCCATCACGTCTGCAGCCTTTACGTTGCGCACACAatacatGAAATACCTGTATGACTACGAGTGCGAGAAGAAGAACCTTTCGACCAGGAGCGAGCTGGATGCAGCCATCGAAGGCAACAAGCGTGAAGGGCGCCGGGCCTCGGGCCAGTACGACGCACAAGCTGCGTTAGCCATGCCCCCACTAAATCGCGTGCCCGCGTCTCTCGCGCAGCTGTCGCAGCACATGCAGCCGCTGTCGCTGTCGCTGGGGGGCGTCGCTCCGCGCCtgccgccgctgccgccgcacgcgccgcaccTCGCGCAGCACGACATCGAGTACCGGGTGCGGGAGTACATGAAGATGATACAGCAGCAGAGGGAGCTTATGAGAAATGGATCCGAATCGCCCCCTAGCAATGGTCCGGCGCCAATAATGTCACCTCGCGACGCAGCCGCCCTCAGTGCCATCGACGTCTCACGCCTCACTCTCTGGTCGCTctacaataataacaacaacaacagcccCCAACCGGACCTTGAGCCACAACGCGAGGCTCTGAACCTGAGCGAGAGCCCCAACTCTCTGTCGAGCGGCGTGAAGCGCGAGGCGTGCCgctcgcccgcgccgccgcccgccaaGCGCCGCACGCCGCGCCCCGCCAGCCGCCCCGCCTCGCCGCGCTCCGACCTGCACTCGCCGCCACAGCACCGCCACAGCCGCAGGGACGCCACCTCACCGCAACAGATCAACGGCATGCCCAATACTAACGGAGTTAATGGAGCTGCCTTCAAGATTACTACTAGAGGAGACGCGACGACAGGAGACCAACAACTAGTGGTATCAATAGAGCTGAACGGAGTAACGTATGAAGGAGTACTATTCCCATCAGGCAATGGCCAGAACGGACACAGACAAATGGTGTCTTAA
- Protein Sequence
- MYLFPRVCTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPPLNRVPASLAQLSQHMQPLSLSLGGVAPRLPPLPPHAPHLAQHDIEYRVREYMKMIQQQRELMRNGSESPPSNGPAPIMSPRDAAALSAIDVSRLTLWSLYNNNNNNSPQPDLEPQREALNLSESPNSLSSGVKREACRSPAPPPAKRRTPRPASRPASPRSDLHSPPQHRHSRRDATSPQQINGMPNTNGVNGAAFKITTRGDATTGDQQLVVSIELNGVTYEGVLFPSGNGQNGHRQMVS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00809841;
- 90% Identity
- iTF_01025756;
- 80% Identity
- -