Dalb000419.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila albomicans
Gene Symbol
stc
Assembly
GCA_009650485.1
Location
NC:2191872-2196462[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.093 6.2e+02 0.1 0.1 8 14 34 40 33 40 0.83
2 17 1.4 9.2e+03 -3.6 0.5 15 18 334 337 333 338 0.79
3 17 1.9 1.3e+04 -4.1 1.6 15 19 361 365 360 365 0.81
4 17 0.04 2.6e+02 1.3 1.7 4 11 394 401 393 404 0.91
5 17 4e-07 0.0026 17.3 15.0 3 19 407 423 406 423 0.94
6 17 1.4 9.3e+03 -3.6 1.1 6 10 449 453 448 453 0.89
7 17 6.8e-09 4.5e-05 22.9 12.2 1 18 459 476 459 477 0.98
8 17 2 1.3e+04 -6.2 4.1 7 13 481 487 481 488 0.77
9 17 2e-09 1.3e-05 24.7 12.9 1 19 517 535 517 535 0.98
10 17 0.54 3.6e+03 -2.3 0.6 5 10 565 570 565 570 0.95
11 17 2.9e-05 0.19 11.4 17.5 4 19 583 598 576 598 0.88
12 17 0.056 3.7e+02 0.8 11.6 1 11 638 648 638 660 0.79
13 17 2.7e-10 1.8e-06 27.4 15.1 1 18 665 682 665 683 0.97
14 17 2 1.3e+04 -4.3 1.2 6 10 712 716 712 716 0.88
15 17 2 1.3e+04 -7.9 9.6 10 18 730 739 719 740 0.74
16 17 6.9e-06 0.046 13.3 12.6 1 16 776 791 776 801 0.94
17 17 6.2e-07 0.0041 16.7 15.3 1 19 808 827 808 827 0.96

Sequence Information

Coding Sequence
ATGGACCAGTattggcaacgacaacagccaCAGTTACAGCAAGAACAGTTTGTTGCAAACGAATCAGGTGGCGATTTGGTAGCTCCAGATGAGTCCGCTGCTGTATGCCACGgtggaaacaataacaactatgtGAATTTCAATCAGTTCATCACGCAACATAATCTGGCAACTTCGAATCTAAGTTATAGTAATGGAAGCGGAGGTGCAGCCTTTGGACTAACGCCGAATAATAGCAACTATGGTGGActTCCATATGCACAACCCTTTTTCGGCTATCAAAATGGTGATGGAGCAGCCGGTGGCAGCGGGGGAATTGCATCTAGCAACAATTATCAAGAATCGTTAAGACATGCGTTGGATATCAATCCTTTTGCCTCAGCCAGCAGTTTTGATTTCAGCACTTCCAAGCTTCAGGCTTCGGCTCCAGAATTTGTGCCCACTTTTGCAAAGCTAAGTTTAAGTGCTTCCCCAGCACctgcaacggcaacgggaTTGGGAGAACAGTCCCCTAGATCGAGCAGCACCAGCAATAATcacaataaatgcaatattaatggcaacaacagcactgCCATACATAATCAACAAGCCCAGCAGCCAAAGGCACATGGTTCTAACAGTCGCCAACAGCGACGCAACGATTACCGCGAGGATCGCATCGATCGCAATGATGATCGCTATGATCGCAAGAAGCCGCAGAAGCAACAGCGCTATGACAATCATAGAAGCAACAAACGACGCGACGACTGGAATCGTAATCGAGACCGCATCAATGGATATGCTCGTGCCAGCGAAGAGCTCGATACAAGCAATAGTAATGACAGCGCCCATCCATCACcggaaaagcaaaagcagcatcAAATATCGCCAAGACGCGCTGGCCCGGACAACGAGAAGTTGTCGCAACGCGAGAAACTTATGCGAGATATTGAGCAACGGCGTCTCGAGTGTCTGGTGTGTGTGGAACAAATCAAGCCGCATCATGGCACATGGTCCTGCCAGAATTGTTACCATGTGCTTCATCTCAAGTGTACAATTACGTGGGCCAGCAGCTCCAAGTCGGCGGAGGGCTGGCGCTGCCCAGCTTGTCAGAACGTTCTGCAGGAACTGCCGCGCGAGTATTTGTGCTTCTGTGGCAAGCTCAAAAATCCGCCCTTAACGCGCACCGAGTTAGCTCACAGTTGTGGGGAACTCTGCTGCCGTGCTGAGGGCTGCAACCATGCGTGCACTTTGCTATGCCATCCGGGTCCATGTCCGCCATGCCAGGCGAATGTGAGTCGCAGTTGTGGCTGCGGAAGAAGCAGCAAACTGATGCAGTGCTCTATGAAGCAGCCGCTGCAATGCGAATCAATTTGCGACAAGCTACTCAATTGTGGCGAGCATCGATGTCAGCAACTCTGCCATGCGGGAAAATGCGAGAATTGCGCGGAAAAGGTGCAGCAGCATTGTCACTGCGGCAAGCAGCAGCGTGGCGTAATGTGCACTAAGGAGAGCCAGGACAGGCGTAGCTACTCGTGCAAGGAATGCTGCGGGAAACCGCTACCCTGTGGCAATCACAAGTGCAAGGACTCATGCCATGCCGGCGCCTGCCGACCTTGTAAGCTCAGCCCCATTCAGATTACTACTTGCCCTTGCGGTAAGCTGCCCGTTGCTGTTGAGCAGCGTGCCAGTTGCCTTGATCCAGTGCCCACCTGCGATAGCGTGTGTGGCAAGACATTACGCTGTGGCAAGCCTGCTCATCCTCATCAGTGCACGAGCAAATGCCATTTGGGACAATGTCCGCCGTGTCCCAAGCAGACGGCCGTCAAATGCCGCTGTGGACACATGGATCAAATGATCAAATGTCGGCAGCTGTCGACGCGAGCCGACGATGCGCGCTGCAAGCGACGTTGCACCAAGAAGCGCAGTTGCGGCAAGCACAAATGTAACGCCGAGTGCTGCATTGATCTTGATCACGCCTGCCCTTTGCCTTGCAATCGCACGTTGAGCTGTGGACGCCACAAGTGCGACCAGCCATGTCATCGCGGTAACTGTCCCCCCTGCTATCGAAGTAGTTTTGAGGAGCTCTATTGCGAGTGTGGTGCAGAAGTCATCTACCCACCGGTGCCTTGTGGCACCAAGAAACCCGTCTGCAAGCGACCCTGTTCTCGCACTCATGGATGCGAGCATGTACCTCAACACAATTGCCATGCGGCGGCTATTTGTCCGCCATGCATGATGTTCACGACCAAATGGTGTCACGGCAATCATGAGCAGCGCAAGACCATACCTTGCTCGCAGCTTAGCTTTAGTTGTGGTCTAGCTTGCGGAAAGCCACTTGCCTGCGGACGCCACAAATGTATAAGACCATGTCACGAAGACGATTGTCAGCAAGCTGGTGAATTGTGCCGCCAAAGCTGTACCAAGCCACGTGTGCTTTGTGGTCACAAATGTGCTGCACCGTGCCATGAAGGTAGTTGCCCAGAGACGCCGTGCAAGGAGCTCGTCGAGGTGCAGTGTGAATGTGGAAACCGGAAGCAGAACCGCAGTTGTCAAGAGCTGGCCAGAGAGCACAGTCGGATTGCTACAGCCCAGTTGGCTTCGTCAATGGCTGAAATGTCTCGTGGCAACTACATGGAACTTAGCGAAATTTTGGCTCCAGGGAAAGcaagcaaatcaaacaaaacATTGGACTGCAATGAAGAGTGCCGCCTATTAGAACGCAATCGTCGGTTGGCTATCGGTTTGCAGTCACGCAACCCGGATACACAGTTAAAGTCACTCACCAAGTACTCGGAATTCACTCGTGGATTCGCCAAGCGAAATCCAGCTTTGACCAAGAGCGTCTATGAAACGTTAAGCGATTTAGTAAAGTTAGCCAAGGAAAGCAAGCAGAAATCGAGAAGCCACTCATTTCCCACCATGAACCGCGAGAAGCGACAACTGGTCCACGAGCTATGTGAGGTGTTTGGCATTGAGTCCGTGTCTTATGACAAGGAGCCCAATCGCAATGTGGTTGCCACGGCGTACAAGGAGCGTtgTTGGTTACCCGCCACTAGTATCATGGAGGTCTTGGCACGTGAGTCAGGCCAACGCCGTGTTCCGGTGCCCAGTAATAACGCCTGGGGCCTGAAAAAGTAG
Protein Sequence
MDQYWQRQQPQLQQEQFVANESGGDLVAPDESAAVCHGGNNNNYVNFNQFITQHNLATSNLSYSNGSGGAAFGLTPNNSNYGGLPYAQPFFGYQNGDGAAGGSGGIASSNNYQESLRHALDINPFASASSFDFSTSKLQASAPEFVPTFAKLSLSASPAPATATGLGEQSPRSSSTSNNHNKCNINGNNSTAIHNQQAQQPKAHGSNSRQQRRNDYREDRIDRNDDRYDRKKPQKQQRYDNHRSNKRRDDWNRNRDRINGYARASEELDTSNSNDSAHPSPEKQKQHQISPRRAGPDNEKLSQREKLMRDIEQRRLECLVCVEQIKPHHGTWSCQNCYHVLHLKCTITWASSSKSAEGWRCPACQNVLQELPREYLCFCGKLKNPPLTRTELAHSCGELCCRAEGCNHACTLLCHPGPCPPCQANVSRSCGCGRSSKLMQCSMKQPLQCESICDKLLNCGEHRCQQLCHAGKCENCAEKVQQHCHCGKQQRGVMCTKESQDRRSYSCKECCGKPLPCGNHKCKDSCHAGACRPCKLSPIQITTCPCGKLPVAVEQRASCLDPVPTCDSVCGKTLRCGKPAHPHQCTSKCHLGQCPPCPKQTAVKCRCGHMDQMIKCRQLSTRADDARCKRRCTKKRSCGKHKCNAECCIDLDHACPLPCNRTLSCGRHKCDQPCHRGNCPPCYRSSFEELYCECGAEVIYPPVPCGTKKPVCKRPCSRTHGCEHVPQHNCHAAAICPPCMMFTTKWCHGNHEQRKTIPCSQLSFSCGLACGKPLACGRHKCIRPCHEDDCQQAGELCRQSCTKPRVLCGHKCAAPCHEGSCPETPCKELVEVQCECGNRKQNRSCQELAREHSRIATAQLASSMAEMSRGNYMELSEILAPGKASKSNKTLDCNEECRLLERNRRLAIGLQSRNPDTQLKSLTKYSEFTRGFAKRNPALTKSVYETLSDLVKLAKESKQKSRSHSFPTMNREKRQLVHELCEVFGIESVSYDKEPNRNVVATAYKERCWLPATSIMEVLARESGQRRVPVPSNNAWGLKK