Basic Information

Insect: Scaptomyza graminum
Gene Symbol: stc_1
Assembly: GCA_018901835.1
Location: JAEIFL010000002.1:1376124-1379848[-]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2 1.5e+04 -4.2 1.6 15 19 450 454 449 454 0.81

2 15 0.016 1.2e+02 2.6 2.5 4 11 483 490 482 491 0.91

3 15 4.3e-07 0.0033 17.2 15.0 3 19 496 512 495 512 0.94

4 15 1.5 1.2e+04 -3.7 1.1 6 10 538 542 537 542 0.89

5 15 4.6e-08 0.00035 20.3 13.8 1 18 548 565 548 566 0.98

6 15 2 1.5e+04 -6.3 3.9 7 13 570 576 570 577 0.74

7 15 2.1e-09 1.6e-05 24.6 12.9 1 19 606 624 606 624 0.98

8 15 1.2 9.1e+03 -3.4 0.5 5 10 654 659 654 659 0.90

9 15 3.1e-05 0.24 11.2 17.5 4 19 672 687 665 687 0.88

10 15 0.075 5.8e+02 0.4 11.9 1 11 727 737 727 749 0.79

11 15 5.1e-10 3.9e-06 26.6 15.5 1 18 754 771 754 772 0.97

12 15 2 1.5e+04 -4.3 1.0 6 10 801 805 800 805 0.82

13 15 2 1.5e+04 -6.7 8.5 9 18 818 828 808 829 0.73

14 15 1.5e-08 0.00012 21.8 11.6 1 16 865 880 865 888 0.96

15 15 3.9e-07 0.003 17.3 12.6 1 19 898 917 898 917 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2	1.5e+04	-4.2	1.6	15	19	450	454	449	454	0.81
2	15	0.016	1.2e+02	2.6	2.5	4	11	483	490	482	491	0.91
3	15	4.3e-07	0.0033	17.2	15.0	3	19	496	512	495	512	0.94
4	15	1.5	1.2e+04	-3.7	1.1	6	10	538	542	537	542	0.89
5	15	4.6e-08	0.00035	20.3	13.8	1	18	548	565	548	566	0.98
6	15	2	1.5e+04	-6.3	3.9	7	13	570	576	570	577	0.74
7	15	2.1e-09	1.6e-05	24.6	12.9	1	19	606	624	606	624	0.98
8	15	1.2	9.1e+03	-3.4	0.5	5	10	654	659	654	659	0.90
9	15	3.1e-05	0.24	11.2	17.5	4	19	672	687	665	687	0.88
10	15	0.075	5.8e+02	0.4	11.9	1	11	727	737	727	749	0.79
11	15	5.1e-10	3.9e-06	26.6	15.5	1	18	754	771	754	772	0.97
12	15	2	1.5e+04	-4.3	1.0	6	10	801	805	800	805	0.82
13	15	2	1.5e+04	-6.7	8.5	9	18	818	828	808	829	0.73
14	15	1.5e-08	0.00012	21.8	11.6	1	16	865	880	865	888	0.96
15	15	3.9e-07	0.003	17.3	12.6	1	19	898	917	898	917	0.97

Sequence Information

Coding Sequence: ATGCATTTACTTGCAGGCGCAAGATCAAGAAACACTCCACAAACACGCCACAAATCGGATCAATTTTTCGCCAGCGTGGGCAAGCGAAAAGAAAAGAAGGCAAACACGCTGCCAGGCGCCGAGCAGAGCGCAAATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGTAATGACTCAGTCGCTGCCGGTAGCTCTAGCGCTGACTGCAATGGCGGCACTTTCACTGGCCACATTAACAACAACAACTATGTTAATTTCAATCAGTTCATCACGCAACATAACTTACAAAGCTCCAACCTCAACTATAACATTGGCGGCGGCGGAGGCGCCTTTGGCCTTACGCCCAACAGCAGCCGCGGCAGCACTGCCAACAGCGCCAGCAACTCTGGCATCAATTCCGCCAGCTTTGGCGTCCCACAATATATGCCGCCTTTATTTGGCTATCAGAATGGCGATAGCGAACAGCATTTTCAAGGAGGTGGAGAGGGAGTTCCCGCCGCTGCTGCTGCTGCCTATCCCAATTTGTACTCATCTTATGGCAATAATCCATTTGCTGCTGCCCCGGGCAGCGGTGGTGGCTATGATTTTAGTGCTTCCAAGCTGCAGGCAACCGCACCCGAATTTGTGCCCAATTTTGCCAAGCTCAGCCTAACGACGACCAACAACAAAATCAACAATAATGACTACAACACTGCCACACAGCCGGAGGAGAGAATGGCCAATGATCAGCCAGCCGCAAGCAGCAGCAACAGCAGCACCAGCACCAACAGCAGCAGCCAGCCTCAGCAGCGGCAGCCGAAACCGCTGCTGACCAGCGGCAACAGCAGTCGCCAGCAGCAGCGACGTCAGGATTATCGCGAAGATCGCCACGAGGATCGGTATGAGCGGGCAAAGAAGCCGCAAAAGCAACAGCGCTACGACAATCATCGCAGCAATAAGCGCCGCGACGACTGGAATCGCAATCGGGATCGCATCAATGGCTATCCGCGTGCTGCCGACGAGCTGGACACCAGCAATAGCAACGATAGCGCCCAAACCTCACCGGAGAAGCAACAACCACAACAACACCAACAACAAATATCGCCACGACGTGCACCCGACAATGAGAAGCTATCGCAGCGGGAGAAACTAATGCGCGACATTGAACAGCGACGTCTGGAGTGTTTGGTGTGTGTGGAGCAGATCAAGGCACATCATGGCACCTGGTCCTGCCAGAACTGCTATCATGTGCTCCATTTGAAGTGCACCATAACGTGGGCGAGTAGCTCGAAGTCGGCAGAGGGTTGGCGCTGTCCCGCCTGCCAGAACGTGCTGGAGCAGGTGCCACATGAATATTACTGCTTTTGCGGCAAGCTCAAGAATCCACCATTGTCACGCAATGAGCTAGCCCATACGTGCGGCGAGCTGTGCTGCCGGGTGGAGGGATGCAATCATGCCTGCACGCTGCTGTGTCATCCGGGACCGTGTCCGCCATGCCAGGCGAATGTGAGTCGCAGCTGCGGCTGTGCACGCACCACCAAAATGATGCAGTGCGCCATGAAACAGCAGCTCCAATGCGAGTCCATCTGCGACAAGCTGCTCAATTGCAGCGAGCATCGCTGCCAGCAGCTCTGCCATGCGGGCAAATGTGAGCCGTGTGGCGAGCAGGTGGAGCAACACTGCCACTGTGGCAAGCAGCAGCGCGAGGTGCTGTGCACCAAGGAGAGCCAGGACAAGCGCAGTTACTCGTGCAAGGAGTGCTGCAGCCGACCGCTGCCCTGCGGCAATCACAAGTGCAAGGATTCGTGCCATGCCGGCGCCTGTCGTCCGTGCAAGCTGAGTCCACAGCAGATCACCAGTTGCCCCTGCGGCAAGCTGCCGGTGCCAGCCGCACAGCGCACCAGCTGCCTCGATCCGGTGCCCACCTGCGAGGGTGTCTGCGGCAAGACATTGCGCTGCGGCAAACCCGCCCATCCGCATCAATGCACCAGCAAATGCCACTTGGGCCAGTGCCCGCCATGCCCCAAGCAGACGGCGGTCAAGTGCCGTTGCGGCCACATGGATCAGCTAATCAAGTGCCGGTCGCTGTCAACACGCGCCGATGATGCACGCTGCAAGCGTCGCTGCACCAAGAAGCGCAGCTGTGGCAAACACAAATGCAATGCCGAATGCTGCATCGATATCGATCATGCCTGCCCGCTGCCCTGCAACCGAACGCTGAGCTGCGGCAAACACAAATGCGATCAGCCGTGCCATCGCGGCAATTGTCCGCCCTGCTATCGCAGCAGCTTTGAGGAGCTGTACTGCGAGTGCGGTGCCGAGGTCATTTATCCACCGGTGCCATGTGGCACCAAGCGTCCACCCTGCAAGCGTACCTGTTCGCGCACCCATGGCTGCGAGCATGTGCCGCAGCACAGTTGCCATGCGGCTGCCGTCTGTCCGCCCTGCATGATGTTCACGACCAAGTGGTGTCATGGCCAACATGAGCAGCGCAAAACAATACCCTGCTCCCAAGAGAGCTTCAGCTGTGGCTTTGCGTGCGGCAAGCCGCTGGCCTGCGGACGCCACAAGTGCATTCGGCCCTGCCACGAGGGCGAATGTCCACAGCAGGCGGGCGAATTGTGCCGCCAGAGCTGCACCAAGCCGCGTTTGCTGTGCGGCCACAAGTGTGCCGCCGCCTGCCATGAGGGCGCCTGTCCGGATACGCCGTGCAAGGAGCTTGTCGAGGTGCAGTGCGAGTGTGGCAATCGCAAGCAGAGCCGCAGCTGCCAGGAACTGGCTCGGGAGCATAGTCGCATTGCCACCGCACAGCTGGCCTCCTCCATGGCGGAGATGTCGCGTGGCAACTACATGGAACTCAGCGAAATTCTTGCACCCACCAAAAACAACAAATCCAATAAAACCTTGGATTGCAACGATGAGTGTCGTCTGTTGGAGCGCAACCGGCGCTTGGCTATCGGACTGCAGTCCCGCAATCCGGAGGCTCAGCTCAAATCGCTGACCAAATATTCGGATTTTATGCGCGGCTTTGCCAAACGCAATCCGGCACTCACCAAGAGTGTCTACGAAACACTAACCGATTTGGTCAAGCTGGCCAAGGAGAGCAAACAGAAGTCACGCAGTCATTCGTTTCCCACCATGAATCGGGAAAAGCGCCAAATGGTGCACGAGCTGTGCGAAGTGTTTGGCGTCGAGTCCGTATCCTATGACAAGGAGCCCAATCGCAATGTAGTCGCCACAGCACACAAGGAACGCTGCTGGTTGCCCGCAACTAGCGTTATGGAGGTTCTTGCACGCGAATCTGGTCAACGTCGTGTCCCGGTACCGAGCAACAATGCTTGGGGCCTCAAAAAGTAG
Protein Sequence: MHLLAGARSRNTPQTRHKSDQFFASVGKRKEKKANTLPGAEQSANKXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNDSVAAGSSSADCNGGTFTGHINNNNYVNFNQFITQHNLQSSNLNYNIGGGGGAFGLTPNSSRGSTANSASNSGINSASFGVPQYMPPLFGYQNGDSEQHFQGGGEGVPAAAAAAYPNLYSSYGNNPFAAAPGSGGGYDFSASKLQATAPEFVPNFAKLSLTTTNNKINNNDYNTATQPEERMANDQPAASSSNSSTSTNSSSQPQQRQPKPLLTSGNSSRQQQRRQDYREDRHEDRYERAKKPQKQQRYDNHRSNKRRDDWNRNRDRINGYPRAADELDTSNSNDSAQTSPEKQQPQQHQQQISPRRAPDNEKLSQREKLMRDIEQRRLECLVCVEQIKAHHGTWSCQNCYHVLHLKCTITWASSSKSAEGWRCPACQNVLEQVPHEYYCFCGKLKNPPLSRNELAHTCGELCCRVEGCNHACTLLCHPGPCPPCQANVSRSCGCARTTKMMQCAMKQQLQCESICDKLLNCSEHRCQQLCHAGKCEPCGEQVEQHCHCGKQQREVLCTKESQDKRSYSCKECCSRPLPCGNHKCKDSCHAGACRPCKLSPQQITSCPCGKLPVPAAQRTSCLDPVPTCEGVCGKTLRCGKPAHPHQCTSKCHLGQCPPCPKQTAVKCRCGHMDQLIKCRSLSTRADDARCKRRCTKKRSCGKHKCNAECCIDIDHACPLPCNRTLSCGKHKCDQPCHRGNCPPCYRSSFEELYCECGAEVIYPPVPCGTKRPPCKRTCSRTHGCEHVPQHSCHAAAVCPPCMMFTTKWCHGQHEQRKTIPCSQESFSCGFACGKPLACGRHKCIRPCHEGECPQQAGELCRQSCTKPRLLCGHKCAAACHEGACPDTPCKELVEVQCECGNRKQSRSCQELAREHSRIATAQLASSMAEMSRGNYMELSEILAPTKNNKSNKTLDCNDECRLLERNRRLAIGLQSRNPEAQLKSLTKYSDFMRGFAKRNPALTKSVYETLTDLVKLAKESKQKSRSHSFPTMNREKRQMVHELCEVFGVESVSYDKEPNRNVVATAHKERCWLPATSVMEVLARESGQRRVPVPSNNAWGLKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00472738;
90% Identity: iTF_01322323; iTF_01322322; iTF_01326843; iTF_01325342;
80% Identity: -