Basic Information

Insect: Drosophila rubida
Gene Symbol: stc
Assembly: GCA_035046165.1
Location: JAWNOF010000014.1:24624292-24627791[+]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 1.5 1.1e+04 -3.7 0.5 15 18 397 400 396 401 0.79

2 16 2 1.5e+04 -4.2 1.6 15 19 424 428 423 428 0.81

3 16 0.058 4.5e+02 0.8 2.0 4 11 457 464 456 465 0.90

4 16 6.1e-07 0.0047 16.7 15.1 1 19 469 486 469 486 0.93

5 16 1.8 1.4e+04 -3.9 0.9 6 10 512 516 511 516 0.88

6 16 2.6e-07 0.002 17.9 14.8 1 18 522 539 522 540 0.98

7 16 2 1.5e+04 -6.3 4.1 7 13 544 550 544 551 0.77

8 16 2.1e-09 1.6e-05 24.6 12.9 1 19 580 598 580 598 0.98

9 16 0.25 1.9e+03 -1.2 1.2 5 10 628 633 628 633 0.96

10 16 3e-05 0.23 11.3 17.5 4 19 646 661 639 661 0.88

11 16 0.073 5.6e+02 0.5 11.9 1 11 701 711 701 723 0.79

12 16 2.9e-10 2.2e-06 27.3 15.1 1 18 728 745 728 746 0.97

13 16 2 1.5e+04 -4.9 1.5 6 10 775 779 775 779 0.87

14 16 2 1.5e+04 -8.4 11.6 4 18 787 802 783 803 0.77

15 16 3.6e-08 0.00028 20.6 13.0 1 16 839 854 839 861 0.88

16 16 2.7e-07 0.0021 17.8 13.3 1 19 871 890 871 890 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	1.5	1.1e+04	-3.7	0.5	15	18	397	400	396	401	0.79
2	16	2	1.5e+04	-4.2	1.6	15	19	424	428	423	428	0.81
3	16	0.058	4.5e+02	0.8	2.0	4	11	457	464	456	465	0.90
4	16	6.1e-07	0.0047	16.7	15.1	1	19	469	486	469	486	0.93
5	16	1.8	1.4e+04	-3.9	0.9	6	10	512	516	511	516	0.88
6	16	2.6e-07	0.002	17.9	14.8	1	18	522	539	522	540	0.98
7	16	2	1.5e+04	-6.3	4.1	7	13	544	550	544	551	0.77
8	16	2.1e-09	1.6e-05	24.6	12.9	1	19	580	598	580	598	0.98
9	16	0.25	1.9e+03	-1.2	1.2	5	10	628	633	628	633	0.96
10	16	3e-05	0.23	11.3	17.5	4	19	646	661	639	661	0.88
11	16	0.073	5.6e+02	0.5	11.9	1	11	701	711	701	723	0.79
12	16	2.9e-10	2.2e-06	27.3	15.1	1	18	728	745	728	746	0.97
13	16	2	1.5e+04	-4.9	1.5	6	10	775	779	775	779	0.87
14	16	2	1.5e+04	-8.4	11.6	4	18	787	802	783	803	0.77
15	16	3.6e-08	0.00028	20.6	13.0	1	16	839	854	839	861	0.88
16	16	2.7e-07	0.0021	17.8	13.3	1	19	871	890	871	890	0.96

Sequence Information

Coding Sequence: ATGGCTGAGtattggcagcaacagcagcagccgcagccgcaacagctTCCTGTAAACGTATCAGGTGGCGATTTGGCAGCTCGAGATGAGtcagctgctgcatgcaacggTGGCAACGGAgccaacggcggcggcagcggcaacagtggcaacacGATGCCCATTGccactggcaacaacaacaactatgtaAATTTCAATCAGTTCATCACGCAGCATAACCTGGCCAGTTCGCACCTCAATTACGGCATTGGGGGCGGTGGTGGTGCCTTTGGACTGAcgccaaacagcaacagcagtaccAGCTTTGATGGAATAAATCCACAGCTCTTTTTCCGCTATCAAAATGGCGACGGAGCAGCGGCGAGTGGGGACGTTGGCGCGTCCCAGAACTATCAAGGCTCGTCGCGACATACGAATGCATACTCAGCGCTGGACAGCAATCCGTTTGCCTCTGGCAGCGGCTTCGTTTTCAGCAACTCCAAGCTGCAGGCGTCGGCCCCAGAATTTGTGCCTAATTTTGCTAAGCTTAGTCTGAATGCTgcaccagcaacagccacaacaactgcaacggAGACGACTTTGGGATTGGGACTGCAGTCGTCTAGttctagcagcagcagcaaccaccacAGTCAGAaccaaaactacaacaaatacaataacaataccAATACTAATACCAGCAGCACTGCCATCCATGCGAATAATGATACAACCAACGAGACGCTAGCGTTGAATAACCATCAACACCATCATTATCACCAACAAGGCCTGCTGCCAAAGGCGCATGGCTCGAGCagtcgccagcagcgacgcaacGAGTATCGAGAGGATCGCATCGACCGCAATGAGGATCGCCATGAGCGCAAGAAGCCGCAGAAGCAACAGCGCTATGACAATCACAGGAGCAATAAACGGCGCGACGACTGGAATCGCAATCGAGACCGCATCAATGGATATCCGCGTGGCACCGAAGAGCTGGACACAAGCAATAGCAACGACAGCGCTCAACCATCGCCggagaagcaacagcagcagcagcagcagcaaatctcGCCGAGACGTGCGGGGCCGGACAACGAGAAGCTGTCGCAACGAGAGAAACTCATGCGAGACATTGAGCAGCGGCGTCTCGAGTGCCTGGTGTGCGTGGAGCAAATCAAGGCGCATCACGGCACTTGGTCGTGCCAGAACTGCTATCATGTGCTCCACCTCAAGTGCACCATCACTTGGGCCAGCAGCTCGAAGTCAGCGGAGGGCTGGCGCTGTCCAGCTTGCCAGAACGTGCTGCAGGAGCTGCCACGCGAATACTTGTGCTTCTGCGGCAAGCTCAAGAATCCTCCCTTGACGCGCACGGAGTTGGCGCACAGCTGCGGCGAACTTTGCTGCCGCGCCGAGAGCTGCAGCCATGCGTGCACCTTGCTCTGCCACCCGGGGCCGTGTCCGCCGTGCCAAGCGAACGTGAGTCgtagctgtggctgcggtCGCACGAGCAAGCTGATGCAGTGCTCCATGAAGACACCGCTGCAGTGCGAGGCGATCTGCGACAAGCTGCTCAACTGCAGCCAGcatcgctgccagctgccttgCCATGCGGGCAAGTGTGAGCCTTGCGGCgagcaggtgcagcagcattgccactgcggcaagcagcagcgcgatGTACTGTGCACCAAGGAGAGCCAGGACAAGCGCAACTACTCGTGCAAGGAGTGCTGCGGCAAGCCACTGCCCTGCGGCAATCACAAGTGCAAGGACTCGTGCCACGCTGGCGCTTGTCGTCCCTGCAAGCTCAGCCCCACGCAAATCACCAGTTGTCCGTGCGGCAAGCTGGCCGTTGCCATAGAGCAGCGTACCAGCTGCCTGGATCCTGTGCCTACCTGCGAGAGCGTGTGCGGCAAGACGCTGCGTTGCGGTAAGCCTGCGCATCCTCATCAGTGCACGAGCAAGTGTCACTTGGGACAGTGCCCGCCGTGTCCCAAGCAGACGGCCGTTAAATGCCGTTGCGGCCACATGGATCAGATGATCAAGTGTCGCCAGCTGTCGACGCGGGCGGACGACGCGCGCTGTAAGCGGCGTTGCACCAAGAAACGCAGCTGCGGCAAGCACAAGTGCAACGCCGAGTGCTGCATCGACATCGATCACGCCTGCCCGTTGCCTTGCAATCGCACCTTGAGCTGCGGACGCCACAAATGCGACCAGCCGTGTCACCGCGGCAACTGTCCACCCTGCTACCGCAGTAGCTTCGAGGAGCTCTACTGCGAGTGCGGGGCGGAAGTCATCTACCCACCTGTGCCATGCGGCACAAAGAAGCCCATCTGCAAGAAGCCCTGCTCGCGTACCCACGGCTGCGAACACACGCCGCAGCACAACTGCCATGCGGCGGCCACCTGCCCGCCCTGCATGATGTTCACGACGAAGTGGTGTCACGGCAATCACGAGCAGCGCAAGACCATTCCTTGCTCGCAGCTCAGCTTCAGTTGCGGTCTGGCTTGTGGCAAGCCGCTGTCTTGTGGACGTCACAAATGCATTCGACCATGCCACGAGGGCGAGTGCCAGCAGCCTGGCGAGGTGTGCCGCCAGAACTGCACCAAGCCGCGTGTGCTATGTGGACACAAGTGTGCTGCAGCGTGCCACGAGGGCGATTGCCCGGAGACGCCGTGCAAGGAGCTGGTCGAGGTGCAGTGCGAGTGTGGCAATCGGAAGCAGAACCGCAGTTGCCAGGAGCTGGCTAGAGAGCACAGTCGCATTGCCACCGCCCAGCTGGCGTCCTCGATGGCGGAGATGTCTCGTGGTAACTACATGGAACTTAGTGAAATTTTGGCGCCAGCGAAAACAAGCAAATCCAACAAAACTTTGGACTGCAATGAGGAGTGTCGCCTGTTGGAGCGCAATCGTCGGCTGGCCATTGGCTTGCAGTCGCGCAATCCGGACACACAGTTGAAGTCGCTCACCAAGTACACGGAATTCGCACGGGGATTCGCCAAGCGCAATCCAGCCCTGACCAAGAGTGTCTACGAGACATTGAGCGATTTGGTGAAGCTAGCCAAGGAAAGCAAGCAGAAGTCACGAAGTCACTCATTTCCCACCATGAACCGCGAGAAGCGACAACTGGTGCACGAGCTGTGTGAGGTTTTTGGCGTTGAGTCCGTGTCTTACGACAAGGAGCCCAATCGCAACGTGGTTGCCACGGCGCACAAAGAGCGTTGTTGGCTGCCCGCGACCAGCATTATGGAGGTCTTGGCACGCGAGTCGGGACAACGTCGTGTCCCGGTGCCAAGCAACAACGCCTGGGGCCTCAAAAAGTAG
Protein Sequence: MAEYWQQQQQPQPQQLPVNVSGGDLAARDESAAACNGGNGANGGGSGNSGNTMPIATGNNNNYVNFNQFITQHNLASSHLNYGIGGGGGAFGLTPNSNSSTSFDGINPQLFFRYQNGDGAAASGDVGASQNYQGSSRHTNAYSALDSNPFASGSGFVFSNSKLQASAPEFVPNFAKLSLNAAPATATTTATETTLGLGLQSSSSSSSSNHHSQNQNYNKYNNNTNTNTSSTAIHANNDTTNETLALNNHQHHHYHQQGLLPKAHGSSSRQQRRNEYREDRIDRNEDRHERKKPQKQQRYDNHRSNKRRDDWNRNRDRINGYPRGTEELDTSNSNDSAQPSPEKQQQQQQQQISPRRAGPDNEKLSQREKLMRDIEQRRLECLVCVEQIKAHHGTWSCQNCYHVLHLKCTITWASSSKSAEGWRCPACQNVLQELPREYLCFCGKLKNPPLTRTELAHSCGELCCRAESCSHACTLLCHPGPCPPCQANVSRSCGCGRTSKLMQCSMKTPLQCEAICDKLLNCSQHRCQLPCHAGKCEPCGEQVQQHCHCGKQQRDVLCTKESQDKRNYSCKECCGKPLPCGNHKCKDSCHAGACRPCKLSPTQITSCPCGKLAVAIEQRTSCLDPVPTCESVCGKTLRCGKPAHPHQCTSKCHLGQCPPCPKQTAVKCRCGHMDQMIKCRQLSTRADDARCKRRCTKKRSCGKHKCNAECCIDIDHACPLPCNRTLSCGRHKCDQPCHRGNCPPCYRSSFEELYCECGAEVIYPPVPCGTKKPICKKPCSRTHGCEHTPQHNCHAAATCPPCMMFTTKWCHGNHEQRKTIPCSQLSFSCGLACGKPLSCGRHKCIRPCHEGECQQPGEVCRQNCTKPRVLCGHKCAAACHEGDCPETPCKELVEVQCECGNRKQNRSCQELAREHSRIATAQLASSMAEMSRGNYMELSEILAPAKTSKSNKTLDCNEECRLLERNRRLAIGLQSRNPDTQLKSLTKYTEFARGFAKRNPALTKSVYETLSDLVKLAKESKQKSRSHSFPTMNREKRQLVHELCEVFGVESVSYDKEPNRNVVATAHKERCWLPATSIMEVLARESGQRRVPVPSNNAWGLKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00472738;
90% Identity: iTF_00595634;
80% Identity: -