Halb013586.1
Basic Information
- Insect
- Hirtodrosophila alboralis
- Gene Symbol
- stc
- Assembly
- GCA_035043045.1
- Location
- JAWNNH010000618.1:128449-132030[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1.4 1.4e+04 -3.6 0.5 15 18 348 351 347 352 0.79 2 16 2 1.9e+04 -4.1 1.6 15 19 375 379 374 379 0.81 3 16 0.015 1.4e+02 2.7 2.5 4 11 408 415 407 416 0.91 4 16 5.8e-07 0.0056 16.8 15.1 1 19 420 437 420 437 0.93 5 16 0.87 8.5e+03 -3.0 1.4 6 10 463 467 462 467 0.90 6 16 2.7e-07 0.0027 17.8 13.8 1 18 473 490 473 491 0.94 7 16 1.7 1.6e+04 -3.9 1.5 7 13 495 501 495 502 0.75 8 16 1.3e-07 0.0013 18.8 10.9 1 19 531 549 531 549 0.98 9 16 1.1 1.1e+04 -3.3 0.5 5 10 579 584 579 584 0.90 10 16 2.3e-05 0.23 11.6 17.0 4 19 597 612 590 612 0.88 11 16 0.057 5.6e+02 0.8 11.6 1 11 652 662 652 674 0.79 12 16 4.7e-10 4.6e-06 26.7 15.5 1 18 679 696 679 697 0.97 13 16 2 2e+04 -6.5 8.7 10 18 744 753 733 754 0.76 14 16 2 2e+04 -4.5 1.5 10 13 761 764 759 765 0.80 15 16 5.9e-07 0.0058 16.8 15.2 1 16 790 805 790 815 0.89 16 16 1.4e-05 0.14 12.3 12.8 1 19 822 841 822 841 0.96
Sequence Information
- Coding Sequence
- ATGTCTGAGtattggcaacaacaacaagaacaagcacagcagcagcagacgcagcagcagctgacgAACGGATCAGGCAGCGGCAGCGTTTCGACAGTCCGCAATGACTCAGCTAATGCTTGCAATGGCGtcggcaacaataacaacaactatgtaaactttaatcaatttatcacACAACACAATCTGGCCAGCTACAACcttggcggcggcggtggcggcagCGCCTTTGGACTGACGCCCAACAGCAATAACACTGCCAACAATTCCTCCAgcgtcagcagcaacagcaatagcttTGGGGGCACATTTTTCGGCTATCAAAATGGAGCTGGAGATGCAAACGCTGCAGGCTgtagcggcggcagcagcagcagcaacaattatcCCAATCTGTACTCGCCCTTTGGCAATAATCCATTTGTAGCTGCGTCAGGTTTCGATTTCAGCTCTTCCAAGCTGCAGGCAACGGCGCCAGAATTTGTGCCCAGCTTTGCCAAGCTCAGCCTGAGTCTGAATGCTGCTCCAGAAACAGAGTCcaggaataacaacaacaacagcagcaccaacaacaCTGCCACACAGCCAAACAGTGAAACAGGAGCCAATCATATACAGAGGCAGCCAAAGCTGCCGCATGGCAGCAACAGTCGCCATCAGCGACGCAACGACTATCGAGAGGATCGCAGCGAGCGCAACGAACGCAATGAGGATCGCTTTGATCGCAGAAAGCCGCAGAAGCAACAGCGCTACGACAATCATCGCAGCAATAAGCGACGCGACGATTGGAATCGCAATCGGGATCGCATCAATGGGTATACACGTGCCGCCGAAGAGCTGGACACAAGCAACAGCAATGACAGCGCCCAGCCTTCGCCggaaaagcaacagcaaccacagCAGACTCAAATCTCGCCCAGACGTGCGCCTGATAATGAGAAACTGTCTCAGCGAGAAAAACTTATGCGCGACATTGAGCAGCGACGCTTGGAGTGTCTGGTGTGCGTGGAACAGATTAAGGCACATCACGGTACCTGGTCCTGCCAGAACTGTTACCATGTGTTGCATCTCAAGTGCACCATTACCTGGGCCAGCAGCTCCAAGTCGGCCGAGGGCTGGCGCTGCCCGGCCTGCCAGAATGTGCTTCAGGAGCTGCCACGTGATTATCTCTGCTTCTGCGGCAAGCTGAAAAATCCACCACTGACGCGCAATGAATTGGCGCACACCTGTGGCGAACTATGCTGCCGCCTCGAGGGCTGCTCCCATGCGTGCACGCTGCTCTGCCATCCGGGGCCATGTCCGCCATGTCAGGCAAATGTAAGCCGCAGCTGCGGCTGTGGACGCACCAGCAAGTTGATGCAGTGCGCCATGAAACAGGAACTGCAATGCGAATCTGTTTGCGACAAGCTGCTCAACTGCAACGAGCATCGATGTCAGCAGTTGTGTCATGCGGGCAAGTGCGAGCCGTGCGGGGAGCTGGTGCAGCAAAACTGCCATTGTGGCAAGCAGCAGCGCGAGGTGCAGTGCACCAGAGAGAGCCAGGACAAGCGCAGCTACTCGTGCAAGGAGTGCTGCAGTAAGCCGCTGCCCTGCGGCAATCACAAGTGCAAGGACTCGTGCCACGCTGCCGCCTGTCGTCCCTGCAAGCTGAGTCCTGCTCAAATCACGAGCTGCCCCTGTGGCAAGCTGCCAGTGGCGGTGACGCAGCGTAGCAGCTGCCTGGATGCGGTGCCCACCTGCGAAGGCGTCTGCGGCAAAACGCTGCGCTGCGGCAAGCCAGCGCATCCGCATCAGTGTGCCAGCAAGTGCCACCTGGGCCAGTGCCCGCCCTGTCCCAAGCAAACGGCTGTCAAGTGCCGCTGTGGTCACATGGACCAAATGATCAAGTGCCGCCAACTGTCGACGCGAGCGGACGACGCTCGCTGCAAGCGACGCTGCACGAAGAAGCGCAGCTGCGGCAAGCATAAGTGCAACGCCGAGTGCTGCATCGATATAGATCACGCGTGCCCGCTGCCCTGCAACCGGACGCTCACCTGCGGCAAGCACAAGTGTGACCAGCCCTGTCATCGCGGCAACTGCCCGCCCTGCTATCGCAGCAGCTTCGAGGAGCTCTACTGCGAGTGCGGCGCCGAGGTCATCTATCCGCCCGTGCCCTGCGGCACCAAGAAGCCCCTCTGCAAGCGTGCCTGCTCGCGCACTCATGGTTGCGAGCATGTGCCGCAGCACAACTGCCATGCGGCGGCCACCTGTCCGCCCTGCATGATGTTCACAACCAAGTGGTGCCACGGCGGGCACGAGCAGCGCAAGACCATTCCCTGCTCGCAGGCCAGCTTCAGCTGTGGGCTGGCTTGCGGCAAGCCGCTGCCCTGTGGCCGGCACAAGTGCGTCAAGCCCTGCCACGAGGGAGATTGCCAGCAGGCGGGCGAACAGTGCCGCCAAAGCTGCACAAAGCCGCGTATTCATTGTGGCCACAAGTGTGCCGCGCCCTGTCACGATGCCGATTGTCCCGAAACGCCATGCAAAGAGATTGTCGAGGTGCAGTGTGACTGCGGCAACCGCAAGCAAAATCGCAGCTGCCAGGAGCTTGCCAGGGAGCACAGCCGCATTGCCACCGCCCAGTTGGCCTCCTCAATGGCGGAGATGTCCCGTGGCAACTACATGGAGCTCAGCGAGATTCTGGCGCCCACCAAAACTagcaaatcaaacaaaacCTTGGATTGCAATGAAGAGTGTCGTTTGTTGGAGCGCAATCGTCGATTGGCTATAGGTTTGCAGTCCCGCAATTCAGAAACGCAGTTAAAGTCGCTTACAAAATATTCGGAATTTTTGCGCGGCTTTGCCAAACGTAATCCGGCGTTGACCAAGAGTGTTTACGAGACTCTAAGCGATTTGGTAAAGCTGGCCAAGGAGAGTAAGCAGAAGTCCAGAAGTCATTCGTTTCCCACAATGAATCGGGAGAAGCGTCAATTGGTGCATGAGCTTTGCGAGGTGTTTGGCGTGGAGTCCATATCCTACGACAAGGAGCCCAATCGTAATGTGGTAGCAACAGCACACAAGGAACGCTGTTGGTTGCCTGCCACAAGTATCATGGAGGTCCTGGCACGTGAATCCGGACAGCGTCGCGTTCCCGTGCCCAGCAACAATGTCTGGAGCCTCAAGAAGTAG
- Protein Sequence
- MSEYWQQQQEQAQQQQTQQQLTNGSGSGSVSTVRNDSANACNGVGNNNNNYVNFNQFITQHNLASYNLGGGGGGSAFGLTPNSNNTANNSSSVSSNSNSFGGTFFGYQNGAGDANAAGCSGGSSSSNNYPNLYSPFGNNPFVAASGFDFSSSKLQATAPEFVPSFAKLSLSLNAAPETESRNNNNNSSTNNTATQPNSETGANHIQRQPKLPHGSNSRHQRRNDYREDRSERNERNEDRFDRRKPQKQQRYDNHRSNKRRDDWNRNRDRINGYTRAAEELDTSNSNDSAQPSPEKQQQPQQTQISPRRAPDNEKLSQREKLMRDIEQRRLECLVCVEQIKAHHGTWSCQNCYHVLHLKCTITWASSSKSAEGWRCPACQNVLQELPRDYLCFCGKLKNPPLTRNELAHTCGELCCRLEGCSHACTLLCHPGPCPPCQANVSRSCGCGRTSKLMQCAMKQELQCESVCDKLLNCNEHRCQQLCHAGKCEPCGELVQQNCHCGKQQREVQCTRESQDKRSYSCKECCSKPLPCGNHKCKDSCHAAACRPCKLSPAQITSCPCGKLPVAVTQRSSCLDAVPTCEGVCGKTLRCGKPAHPHQCASKCHLGQCPPCPKQTAVKCRCGHMDQMIKCRQLSTRADDARCKRRCTKKRSCGKHKCNAECCIDIDHACPLPCNRTLTCGKHKCDQPCHRGNCPPCYRSSFEELYCECGAEVIYPPVPCGTKKPLCKRACSRTHGCEHVPQHNCHAAATCPPCMMFTTKWCHGGHEQRKTIPCSQASFSCGLACGKPLPCGRHKCVKPCHEGDCQQAGEQCRQSCTKPRIHCGHKCAAPCHDADCPETPCKEIVEVQCDCGNRKQNRSCQELAREHSRIATAQLASSMAEMSRGNYMELSEILAPTKTSKSNKTLDCNEECRLLERNRRLAIGLQSRNSETQLKSLTKYSEFLRGFAKRNPALTKSVYETLSDLVKLAKESKQKSRSHSFPTMNREKRQLVHELCEVFGVESISYDKEPNRNVVATAHKERCWLPATSIMEVLARESGQRRVPVPSNNVWSLKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00472738;
- 90% Identity
- -
- 80% Identity
- -