Shsu018962.1
Basic Information
- Insect
- Scaptomyza hsui
- Gene Symbol
- stc
- Assembly
- GCA_018152825.1
- Location
- JAECXO010000269.1:10025315-10028973[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2 2e+04 -4.1 1.6 15 19 389 393 388 393 0.81 2 15 0.015 1.5e+02 2.7 2.5 4 11 422 429 421 430 0.91 3 15 1.4e-06 0.014 15.6 15.3 3 19 435 451 434 451 0.92 4 15 1.2e-09 1.2e-05 25.3 13.2 1 18 487 504 487 505 0.98 5 15 2 2e+04 -6.3 3.9 7 13 509 515 509 516 0.74 6 15 2 2e+04 -9.6 8.0 6 12 535 541 534 541 0.78 7 15 1.3e-07 0.0013 18.8 10.9 1 19 545 563 545 563 0.98 8 15 1.1 1.1e+04 -3.3 0.5 5 10 593 598 593 598 0.90 9 15 2.4e-05 0.23 11.6 17.0 4 19 611 626 604 626 0.88 10 15 0.062 6.1e+02 0.7 11.7 1 11 666 676 666 688 0.79 11 15 4.8e-10 4.7e-06 26.6 15.5 1 18 693 710 693 711 0.97 12 15 1.4 1.4e+04 -3.6 1.5 6 10 740 744 739 745 0.61 13 15 2 2e+04 -6.9 8.7 9 18 757 767 747 768 0.73 14 15 1.1e-08 0.00011 22.3 11.2 1 16 804 819 804 827 0.96 15 15 5.2e-07 0.0051 16.9 13.1 1 19 837 856 837 856 0.96
Sequence Information
- Coding Sequence
- ATGGCCGAATATTGGCAGCAACAACAACAGCAGCCGTCAGCGTCTCAGCAGCAGCAGCTGACAAATGGAGCGTCAGCGCGCAATGACTCAGCCGCTGCCGAGGGCTCTAGCTCTAGCGCTGCCTGCAACGGCGCTTCCAGCGGCGGCCACACAAACAACAACTATGTTAATTTCAATCAGTTCATCACGCAACATAATTTACACAGCTCCAACCTCAACTACAACATTGGCGGCGGTGGCGGCGCCTTTGGCCTGACGCCCAACAACAGCAGCACCAGCGGCAGTGTTGCCAACAGCGGCAGCAACTCCTCCAGCTTTGGCATCGCACAATATGTGCCGCCTTTATTTGGCTATCAGAACGGCGATGGAGGCCAGCATTATCAGGGAGGAGGAGGAGGAGGAGGAAGCGTCGCCCATCCCAATTTGTACTCACCTTTCGGCAATAATCCATTTGCTGCCCCTGGTGGTGGTTTTGATTTTAGCGCTTCCAAGCTGCAAGCAACGGCGCCCGAATTCGTGCCCAATTTTGCCAAGCTCAGCCTGACGACGACGACCAACAAAACCAACAACAACAACAATAACAATACCAATAGCAATAGCAACAACACTGCCACACAGCCGGAGAATCTGGCCAATGAGCCAGCAGCAGCCAGCAGCAATCCTCAGCAGCGGCATCCGAAACCGCTGGCCAGCAACAACAGTCGCCAGCAGCAGCGACGTCAGGACTACCGCGAGGATCGCCAGGATCGGCACGAGGATCGGTATGAGCGCGCAAAGAAACCGCAAAAGCAACAGCGCTACGACAATCATCGCAGCAACAAACGGCGCGACGACTGGAATCGCAATCGGGATCGCATCAATGGCTATCCACGTGCCGCCGAGGAACTGGACACCAGCAACAGCAACGACAGCGCCCAAGCCTCGCCGGAGAAGCAACCGCAGCCGCAACAAATCTCGCCACGACGTGCGCCGGATAATGAGAAGCTATCGCAGCGGGAGAAGCTAATGCGCGACATTGAGCAGCGACGTCTGGAGTGTTTGGTGTGTGTGGAACAGATCAAGGCGCATCATGGCACCTGGTCCTGCCACAACTGCCATCATGTGCTGCATCTCAAGTGCACCATCACGTGGGCGAGCAGCTCCAAGTCTGCGGAGGGCTGGCGCTGTCCCGCCTGCCAGAACGTGCTGGAGGAGGTGCCTCGCGAATATTTCTGCTTCTGCGGCAAGCTCAAGAATCCGCCACTAACACGCAACGAGCTGGCCCACACCTGCGGCGAGCTCTGCTGTCGCGTCGAGGGATGCACTCATGCGTGCACGCTTCTGTGTCATCCCGGTCCGTGTCCGCCATGCCAGGCGAACGTGAGTCGCAGCTGCGGCTGCGGACGCACCTCCAAGATGATGCAGTGCGCCATGAAGCAGCAGCTCCAATGCGCCTCCATCTGCGATAGGCCGCTCAACTGCGGCGAGCATCGCTGCCAGCAGCTCTGCCATGCCGGCAAATGTGAGCCGTGTGCGGAGCAGGTGGAGCAACACTGCCACTGTGGCAAGCAGCGGCGCGAGGTGCTCTGCACCAAGGAGAGTCAGGATAAGCGCAGCTACTCCTGCAAGGAGTGCTGCTGCAAGCCGCTGCCCTGCGGCAACCACAAGTGCAAGGATTCCTGCCATGCCGCCGCCTGTCGTCCCTGCAAGCTGAGTCCACAGCAGATCACCAGCTGCCCCTGCGGCAAGCTGGCCGTGCCGCCCACGCAGCGCACCAGCTGCCTGGACCCAGTGCCCACCTGCGAGGGCGTCTGCGGCAAGACGCTGCGCTGCGGCAAGCCAGCTCATCCGCATCAATGCGCCAGCAAATGTCACCTGGGCCAGTGTCCGCCCTGTCCCAAGCAGACGGCCGTCAAGTGCCGCTGCGGGCACATGGACCAGCTGATCAAGTGCCGGCAGCTGTCGTCGCGCGTGGACGATGCGCGCTGCAAGCGTCGCTGCACCAAGAAGCGCAGCTGCGGCAAACACAAATGCAATGCGGAATGCTGCATCGATATAGACCATGCCTGCCCGCTGCCCTGCAATCGGACCCTCAGCTGTGGCAAGCACAAGTGCGATCAGCCGTGCCATCGCGGCAATTGCCCGCCCTGCTATCGCAGCAGCTTCGAGGAGCTGTACTGTGAGTGTGGGGCGGAGGTCATCTATCCGCCGGTGCCGTGTGGCACCAAGCGTCCGCCCTGCAAGCGTCCCTGTTCGCGCACCCACGGCTGTGAGCATGTGCCACAGCATAGTTGCCATGCGGCGTCCGTCTGTCCGCCCTGCATGATGTTCACCACCAAGTGGTGTCATGGCAATCATGAGCAGCGCAAGACGATACCCTGCTCCCAGGAGAGCTTCAGCTGTGGCTTTGCCTGCGGCAAGCCGCTAGCCTGCGGTCGTCATAAGTGCATCCGGCCCTGCCACGAGGGCGAGTGTCCGCAGCAGGCGGGCGATCTGTGCCGCCAGAGCTGCACCAAGCCGCGCTTGCTGTGCGGCCACAAATGTGCCGCTGCCTGCCATGAGGGCGCCTGTCCGGAGACACCGTGCAAGGAGCTCGTCGAGGTGCAGTGCGAGTGCGGCAATCGCAAGCAGAACCGCAGCTGCCAGGAACTTGCGCGGGAGCACAGTCGCATTGCCACCGCACAGCTGGCCTCCTCCATGGCGGAGATGTCGCGTGGTAACTACATGGAACTCAGCGAAATCCTCGCACCCACCAAAACCAACAAATCCAATAAGACCTTGGACTGCAATGATGAGTGTCGTCTGTTGGAGCGCAATCGGCGCTTAGCTATTGGACTGCAGTCACGGAATCCGGATACACAGCTAAAGTCGCTGACCAAATATTCAGAATTCATGCGCGGCTTTGCCAAGCGCAATCCGGCACTCACCAAGAGTGTCTATGAAACACTTACCGATTTGGTCAAGCTGGCCAAGGAGAGCAAGCAAAAGTCGCGCAGTCACTCGTTTCCCACCATGAATCGGGAGAAGCGTCAAATGGTGCACGAGCTGTGCGAAGTGTTTGGCGTGGAGTCCGTGTCCTACGATAAGGAGCCCAATCGCAACGTAGTCGCCACAGCGCACAAGGAACGCTGCTGGTTGCCCGCCACTAGCGTTATGGAGGTCCTTGCACGCGAATCCGGTCAACGTCGCGTCCCGGTGCCCAGCAACAATGCCTGGGGCCTTAAAAAGTAG
- Protein Sequence
- MAEYWQQQQQQPSASQQQQLTNGASARNDSAAAEGSSSSAACNGASSGGHTNNNYVNFNQFITQHNLHSSNLNYNIGGGGGAFGLTPNNSSTSGSVANSGSNSSSFGIAQYVPPLFGYQNGDGGQHYQGGGGGGGSVAHPNLYSPFGNNPFAAPGGGFDFSASKLQATAPEFVPNFAKLSLTTTTNKTNNNNNNNTNSNSNNTATQPENLANEPAAASSNPQQRHPKPLASNNSRQQQRRQDYREDRQDRHEDRYERAKKPQKQQRYDNHRSNKRRDDWNRNRDRINGYPRAAEELDTSNSNDSAQASPEKQPQPQQISPRRAPDNEKLSQREKLMRDIEQRRLECLVCVEQIKAHHGTWSCHNCHHVLHLKCTITWASSSKSAEGWRCPACQNVLEEVPREYFCFCGKLKNPPLTRNELAHTCGELCCRVEGCTHACTLLCHPGPCPPCQANVSRSCGCGRTSKMMQCAMKQQLQCASICDRPLNCGEHRCQQLCHAGKCEPCAEQVEQHCHCGKQRREVLCTKESQDKRSYSCKECCCKPLPCGNHKCKDSCHAAACRPCKLSPQQITSCPCGKLAVPPTQRTSCLDPVPTCEGVCGKTLRCGKPAHPHQCASKCHLGQCPPCPKQTAVKCRCGHMDQLIKCRQLSSRVDDARCKRRCTKKRSCGKHKCNAECCIDIDHACPLPCNRTLSCGKHKCDQPCHRGNCPPCYRSSFEELYCECGAEVIYPPVPCGTKRPPCKRPCSRTHGCEHVPQHSCHAASVCPPCMMFTTKWCHGNHEQRKTIPCSQESFSCGFACGKPLACGRHKCIRPCHEGECPQQAGDLCRQSCTKPRLLCGHKCAAACHEGACPETPCKELVEVQCECGNRKQNRSCQELAREHSRIATAQLASSMAEMSRGNYMELSEILAPTKTNKSNKTLDCNDECRLLERNRRLAIGLQSRNPDTQLKSLTKYSEFMRGFAKRNPALTKSVYETLTDLVKLAKESKQKSRSHSFPTMNREKRQMVHELCEVFGVESVSYDKEPNRNVVATAHKERCWLPATSVMEVLARESGQRRVPVPSNNAWGLKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00472738;
- 90% Identity
- -
- 80% Identity
- -