Hcon003378.1
Basic Information
- Insect
- Hirtodrosophila confusa
- Gene Symbol
- stc
- Assembly
- GCA_035043065.1
- Location
- JAWNNI010000038.1:1190210-1194624[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1.4 1.8e+04 -3.6 0.5 15 18 354 357 353 358 0.79 2 16 2 2.5e+04 -4.1 1.6 15 19 381 385 380 385 0.81 3 16 0.056 7e+02 0.8 2.0 4 11 414 421 413 422 0.90 4 16 1.4e-06 0.017 15.6 15.3 3 19 427 443 426 443 0.92 5 16 2.5e-08 0.00031 21.2 10.9 1 18 479 496 479 497 0.98 6 16 2 2.5e+04 -6.3 3.9 7 13 501 507 501 508 0.74 7 16 5.5e-09 6.9e-05 23.2 11.9 1 19 537 555 537 555 0.98 8 16 1.1 1.4e+04 -3.3 0.5 5 10 585 590 585 590 0.90 9 16 8.7e-05 1.1 9.8 16.6 4 19 603 618 596 618 0.87 10 16 0.036 4.5e+02 1.4 11.5 1 18 658 679 658 680 0.77 11 16 4.7e-10 5.9e-06 26.7 15.5 1 18 685 702 685 703 0.97 12 16 2 2.5e+04 -4.2 0.8 6 10 732 736 732 736 0.89 13 16 0.056 7e+02 0.8 7.1 10 18 750 759 747 760 0.88 14 16 2 2.5e+04 -4.5 1.5 10 13 767 770 765 771 0.80 15 16 7.4e-08 0.00092 19.6 13.9 1 16 796 811 796 821 0.94 16 16 2e-05 0.25 11.9 13.0 1 19 828 847 828 847 0.96
Sequence Information
- Coding Sequence
- ATGGCCGAGtattggcagcagcagcaacaacaacaacaacagcagcagcagcagcagctgacaaACGGCGCTGCTAACTTTCCAGCAGCCCACAATGAGTCAGCAGCTGGCTGTAATGGCGGCAACGCTGCTGCTagtggcaacaataacaactatgtaaatttcaatcaatttatcACGCAACACAATCTGGCCAGCTCCAGCTATAGCattggcggcggcggcggcgcctTTGGCCTGACgcccagcggcagcagcaacagcagcaacacagcCAACAACTCctccagcggcagcggcagcggcagcagcaatagcaacagcttTGGCGGCCAATTTTTTGGCTATCAAAATGGTGCGTCGGGCAACAATTATCAAGGCACGGGGCAAGCTTATTCCAATCTATACTCGCCCTTTGGCAACAATCCTTTTGCTGCTTCGAGTGGCTTCGATTTCAGCACTTCCAAGCTGCAGGCAACGGCGCCAGAATTTGTGCCCAACTTTGCCAAACTCAGCCTGACTGCGGCTCCAGCTACGGAGCCCAAGAcctataacaataacagccaCACTGCCACACAGCCAAACTGTGAAGCGGCTAATCATCCAGAGGCAGCAAACTtcaatcagcatcaacagcagcagcagcagcaacagcggcagccaAAGCCGCACGGCAGCAACAGTCGCCAGCAGCGACGCAACGACTATCGTGACGAACGCAGCGAGCGCAATGAGGATCGCTATGATCGCCGAAAGCcgcagaagcagcagcgctaCGACAATCATCGCAGTAACAAGCGACGCGACGACTGGAATCGCAATCGGGATCGCATCAATGGCTATACACGCGCCGCAGAGGAGCTGGAcacgagcaacagcaacgacagcGCCCAGCCTTCGCCggaaaagcaacagcagccgcaacaaATCTCGCCGAGACGTGCGCCCGATAACGAGAAGCTGTCGCAGCGGGATAAGCTTGTGCGCTACATTGAGCAGCGTCGCTTGGAGTGTCTGGTGTGCGTGGAGCCGATAAAGGCGCATCATGGCACTTGGTCCTGCCAGAACTGTTATCATGTGCTGCATCTCAAGTGCATCATGACGTGGGCGAGCAGCTCGAAGTCGGAAGAGGGCTGGCGCTGTCCGGCCTGCCAGAATGTGCTCGCGGAGCTGCCGCGGGACTATCTATGCTTTTGCGGCAAGCTGAAGAATCCGCCACTGACGCGCAACGAATTGGCGCACAGCTGCGGCGAGCTATGCTGTCGCGTTGAGGGCTGCACCCATGCGTGCACGCTGCTCTGCCATCCGGGGCCGTGTCCGCCCTGCCAGGCAAATGTGAGCCGCAACTGCGGCTGCGAACGCACCAGCAAGGTGGTGCAGTGCTCCatgaagcagcagctgcaatgtGAGTTCATTTGCGACAAGCTGCTCAACTGCAGCGAGCATCGCTGTGATCAGCTCTGTCATGCCGGCAAGTGCGAGCCGTGCGCTGAGCTGGTGGAGCAGCATTGCCACTGTGGCAAGCAGCAGCGCGAGGTGCAGTGCACCAGGGAGAGCCAGGACAAGCGCAGCTACTCGTGCAAGGAGTGCTGCGGCAAACCGCTGCCTTGTGGCAATCACAAATGCAAGGACTCGTGCCATGCCGGCGCCTGTCGCACCTGCAAGTTGAGCCCGACACAAATCACGAGCTGCCCCTGCGGCAAGCTGCCAGTGCCTCCggagcagcgcagcagctgccTGGACGCCGTGCCCACCTGCGAGGGTGTCTGCGGCAAAACGCTGCGCTGCGGCAAGCCGGCGCATCCGCATCAGTGTACCAGCAGGTGCCACCTGGGCCAGTGCCCGCCCTGTCAGAAGCAGACGGCGGTCAAGTGCCGCTGCGGCCACATGGATCAGCTGATTAAATGCCGGCAGCTGTCGACGCGTGGGGATGACGCTCGCTGCAAGCGGCGCTGCATTAAGAAGCGCAGCTGCGGCAAGCACAAGTGCAACGCCGAGTGCTGCATTGATATTGATCACGACTGCCCGCTGCCCTGCAATCGCACACTCACCTGTGGCAAGCACAAATGCGACCAGCCCTGTCATCGCGGCAACTGCCCGCCCTGCTATCGCAGCAGCTTCGAGGAGCTGTACTGCGAGTGCGGCGCTGAGGTCATCTACCCGCCGGTGCCCTGTGGCACCAAGAAGCCCATCTGCAATCGTCCCTGCTCGCGCATCCGCCGCTGCGACCATGTCCAGCAGCACAACTGCCATTCGACGGGCGGCTGCCCGCCCTGCATGATTTTCACCACGAAGTGGTGCCACGGCGGTCACGAGCAGCGCAAGACCATTCCCTGCTCGCAGGCTAGCTTCAGTTGCGGCTTGGCATGCGGCAAGCCGCTCGCCTGTGGACGCCACAAGTGCATCAAGCCCTGCCACGAGGGCGATTGCCAGCAGGCGGGCGAACTGTGCCGCCAGAGCTGCACCAAGCCGCGCCTGCATTGCGGCCACAAGTGTGCGGCACCATGCCACGATAACGATTGTCCCGAAACGCCGTGCAAGGAGCTCGTCGAGGTACAGTGCGAGTGCGGCAATCGCAAGCAGAACCGCAGCTGCCAGGAGCTGGCCAGGGAGCATAGTCGAATTGCCACCGCTCAGTTGGCCTCCTCCATGGCGGAGATGTCCCGCGGCAACTACATGGAACTCAGCGAAATTTTGGCTCCCGCCAAAACtagcaaatcaaacaaaacCTTGGACTGCAACGATGAGTGTCGTCTGTTGGAGCGCAATCGTCGTTTGGCAATAGGTTTGCAGTCGCGCAATCCGGAGACGCAGTTGAAGTCGCTCACCAAGTACTCGGAATTCCTGCGTGGCTTTGCCAAGCGCAATCCCGTGCTAACCAAGAGCGTCTATGAAACTCTAAGCGACTTGGTTAAGCTGGCCAAGGAGAGCAAACAGAAATCGAGGAGTCACTCATTTCCCACCATGAATCGGGAAAAGCGTCAGCTGGTGCACGAGCTGTGCGAGGTGTTTGGCGTGGAGTCCGTGTCCTACGACAAGGAGCCCAATCGCAATGTGGTGGCCACAGCACACAAGGAGCGCTGCTGGTTGCCTGCCACTAGTATCATGGAGGTCCTGGCACGTGAATCTGGACAGCGTCGCGTTCCGGTGCCCAGCAACAATGCCTGGAGTCTCAAAAAGTAG
- Protein Sequence
- MAEYWQQQQQQQQQQQQQQLTNGAANFPAAHNESAAGCNGGNAAASGNNNNYVNFNQFITQHNLASSSYSIGGGGGAFGLTPSGSSNSSNTANNSSSGSGSGSSNSNSFGGQFFGYQNGASGNNYQGTGQAYSNLYSPFGNNPFAASSGFDFSTSKLQATAPEFVPNFAKLSLTAAPATEPKTYNNNSHTATQPNCEAANHPEAANFNQHQQQQQQQQRQPKPHGSNSRQQRRNDYRDERSERNEDRYDRRKPQKQQRYDNHRSNKRRDDWNRNRDRINGYTRAAEELDTSNSNDSAQPSPEKQQQPQQISPRRAPDNEKLSQRDKLVRYIEQRRLECLVCVEPIKAHHGTWSCQNCYHVLHLKCIMTWASSSKSEEGWRCPACQNVLAELPRDYLCFCGKLKNPPLTRNELAHSCGELCCRVEGCTHACTLLCHPGPCPPCQANVSRNCGCERTSKVVQCSMKQQLQCEFICDKLLNCSEHRCDQLCHAGKCEPCAELVEQHCHCGKQQREVQCTRESQDKRSYSCKECCGKPLPCGNHKCKDSCHAGACRTCKLSPTQITSCPCGKLPVPPEQRSSCLDAVPTCEGVCGKTLRCGKPAHPHQCTSRCHLGQCPPCQKQTAVKCRCGHMDQLIKCRQLSTRGDDARCKRRCIKKRSCGKHKCNAECCIDIDHDCPLPCNRTLTCGKHKCDQPCHRGNCPPCYRSSFEELYCECGAEVIYPPVPCGTKKPICNRPCSRIRRCDHVQQHNCHSTGGCPPCMIFTTKWCHGGHEQRKTIPCSQASFSCGLACGKPLACGRHKCIKPCHEGDCQQAGELCRQSCTKPRLHCGHKCAAPCHDNDCPETPCKELVEVQCECGNRKQNRSCQELAREHSRIATAQLASSMAEMSRGNYMELSEILAPAKTSKSNKTLDCNDECRLLERNRRLAIGLQSRNPETQLKSLTKYSEFLRGFAKRNPVLTKSVYETLSDLVKLAKESKQKSRSHSFPTMNREKRQLVHELCEVFGVESVSYDKEPNRNVVATAHKERCWLPATSIMEVLARESGQRRVPVPSNNAWSLKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00472738;
- 90% Identity
- -
- 80% Identity
- -