Sred012530.1
Basic Information
- Insect
- Scaptomyza reducta
- Gene Symbol
- stc
- Assembly
- GCA_035044485.1
- Location
- JAWNNV010001135.1:195282-198821[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.4 1.2e+04 -3.7 0.5 15 18 367 370 366 371 0.79 2 13 2 1.7e+04 -4.1 1.6 15 19 394 398 393 398 0.81 3 13 0.015 1.3e+02 2.7 2.5 4 11 427 434 426 435 0.91 4 13 5.9e-07 0.0051 16.8 15.1 1 19 439 456 439 456 0.93 5 13 4.4e-08 0.00038 20.4 13.8 1 18 492 509 492 510 0.98 6 13 2 1.7e+04 -6.3 3.9 7 13 514 520 514 521 0.74 7 13 2e-09 1.7e-05 24.6 12.9 1 19 550 568 550 568 0.98 8 13 9.6e-05 0.83 9.7 17.1 4 19 616 631 609 631 0.88 9 13 0.062 5.4e+02 0.7 11.7 1 11 671 681 671 693 0.79 10 13 4.8e-10 4.1e-06 26.6 15.5 1 18 698 715 698 716 0.97 11 13 2 1.7e+04 -5.9 9.5 9 18 762 772 752 773 0.79 12 13 1e-08 8.9e-05 22.4 11.5 1 16 809 824 809 832 0.90 13 13 5.2e-07 0.0045 16.9 13.1 1 19 842 861 842 861 0.96
Sequence Information
- Coding Sequence
- ATGGCCGAAtactggcagcaacaacaactgccgcagcagccgcagtcaacgcctcagcaacagcagctgacaAATggagcggcagcggcagcgcaTAATGACTCAAGCTCTGGCGCTGCCTGCAATGgccacaccagcaacagcaacaacaactatgttAACTTCAATCAGTTTATCACGCAACATAATTTACACAGCTACAACATGGGCAGCGGTGGCGGCGCCTTTGGCCTGACGCCcaacacaagcacaagcacagccagcagcagcggcagcggcagcgctgccaacagcaccagcaattCCTCGTCCAGCTTTGGTGCCACACCATATGCGCTACCTTTATTAGGCTATCAGAATGGCGATAGCGGCCAGCATTATCAGGGTAATGGAGAgggtggaggaggaggagctgcTGCCTATCCCCATGTGTACTCACCTTTTGGCGATAATCCATTTGCTGCTGCGCCGGCCAGCGGCTTTGATTTTAGTGCTTCTAAGCTGCATGCGAACGCACCCGAATTTGTGCCCAATTTTGCCAAACTCAGCCTGTcgacgaacagcaacaacaacaataacaacaacactgccACACAACCTGAGCCTATGACCCACGagcagccagcaacagcagcagcagcagcaacagccagcagcaacaattcaCAGCACCGGCAACCGAAACCGTTGATGGCCAGCGGCAAcaccggcaacagcaacactcgccagcagcagcgacgtcagGATTATCGCGAGGATCGACACGAGGATCGATATGAGCGCGCAAAGAAGCCGCAGAAGCAACAACGCTACGACAATCATCGCAGCAACAAGCGACGCGACGACTGGAATCGCAATCGCGATCGCATCAATGGCTATCCACGTGCCGCCGACGAACTggacaccagcaacagcaacgacagtGCCCAAACCTCACCCGAAAagcaaccgcagcagcaacaacaaatctcGCCACGACGTGCGCCCGACAATGAGAAGCTATCGCAGCGTGAGAAGCTCATGCGTGACATCGAGCAGCGGCGTCTCGAGTGCCTGGTGTGTGTGGAGCAGATCAAGGCACATCATGGCACCTGGTCGTGCCAGAACTGCTATCATGTGCTGCATCTCAAGTGCACCATTACGTGGGCAAGCAGCTCCAAGTCTGCCGAGGGCTGGCGCTGTCCCGCCTGCCAAAACGTGCTCGAGGAGGTGCCACGCGAATACAATTGCTTTTGTGGCAAGCTCAAGAATCCACCATTAACACGCAACGAACTGGCGCACACCTGCGGGGAACTGTGCTGCCGCGTGGAGGGATGCAGTCATGCTTGCACGCTGCTGTGCCATCCGGGTCCGTGTCCGCCCTGCCAGGCGAATGTGAGTCGCAGCTGCGGCTGTGGCCGCAGCTCCAAAATGATGCAGTGCGCCatgaagcagcagctgcaatgcGAGTCCAGCTGCGATAAGTCGCTCAACTGCAGCGAGCATCGCTGCCAGCAGCTGTGCCATGCGGGCAAATGCGAGCCGTGTGGCGAGCAGGTGGAGCAGCACTGCCACTGTGGCAAGCAGCAGCGCGAAGTGCTGTGCACCAAGGAGAGTCAGGATAGGCGCAGTTACTCGTGCAAGGAGTGCTGCAGCAAGCCGTTGCCCTGCGGCAATCACAAGTGCAAGGATTCGTGTCATGCCGGCGCCTGTCGTCCCTGCAAGCTGAGTCCACAGCAGATCACCAGCTGCCCCTGCGGCAAGCTGCCGGTGCCGAGCACGCAACGCGCCAGCTGCCTCGACCCGGTGCCCACCTGCGATGGCGTCTGCAGCAAGACACTGCGCTGCGGCAAGCCCGCCCATCCGCATCAATGCGCCACCAAATGCCATTTGGGCCAGTGTCCACCCTGTCCCAAGCAGACGGCTGTCAAATGCCGCTGCGGCCACATGGATCAGCTGATCAAGTGCCGGCAGCTGTCAACACGCGCGGATGACGCGCGTTGCAAGCGTCGCTGCACCAAGAAGCGCAGCTGTGGCAAGCACAAATGCAATGCGGAATGTTGCATCGACATCGATCATGCCTGCCCGCTGCCCTGCAATCGAACACTGAGCTGTGGCAAGCACAAGTGCGATCAGCCGTGTCATCGCGGCAACTGCCCGCCCTGCTATCGCAGCAGCTTCGAGGAGCTGTACTGTGAGTGCGGCGCCGAGGTCATCTATCCGCCTGTGCCGTGTGGCACCAAGCGTCCGCCCTGCAAGCGCCAGTGTTCGCGCACCCACGGCTGTGAGCATGTGCCACAGCATAGTTGCCACGCGGCGGCTAGCTGCCCGCCCTGCATGATGTTCACAACGAAGTGGTGTCATGGCAACCATGAGCAACGCAAGACGATACCCTGCTCCCAGGAGAGCTTCAGCTGTGGCCTGGCCTGCGGCAAGCCCTTGGCCTGCGGTCGCCACAAATGCATTCGACCCTGCCACGAGGGCGAGTGTCCACAGCAGGCGGGCGATGTGTGCCGCCAGAGCTGCACCAAGCCGCGTTTGCTGTGCGGCCACAAGTGTGCCGCCGCCTGTCATGAGGGCGCCTGTCCGGAGACGCCGTGCAAGGAGCTGGTCGAGGTGCAGTGCGAGTGCGGCAATCGCAAGCAGAGTCGCAGCTGCCAGGAGCTGGCGCGGGAGCACAGTCGCATTGCGACCGCGCAGCTGGCCTCCTCCATGGCGGAGATGTCGCGCGGCAACTACATGGAGCTGAGCGAAATACTTGCACCCACCAAAAACAGCAAGTCCAATAAAACCTTGGATTGCAATGATGAGTGTCGTCTGTTGGAACGCAATCGTCGCTTGGCTATCGGACTGCAATCGCGCAATCCGGAAACGCAGCTTAAGTCGCTCACAAAGTATTCGGAATTCATGCGCGGCTTTGCCAAGCGTAATCCGCTGCTAACCAAGAGTGTCTATGAAACACTAACCGACTTGGTCAAGCTGGCCAAGGACAGCAAGCAAAAGTCACGCAGCCATTCGTTTCCCACAATGAATCGCGAGAAGCGTCAAATGGTGCACGAGCTGTGCGAAGTGTTCGGTGTGGAGTCCGTATCCTATGACAAGGAGCCCAATCGCAATGTGGTCGCCACAGCGCACAAGGAACGCTGCTGGTTGCCCGCCACAAGCGTTATGGAGGTCCTTGCACGTGAGTCCGGTCAACGTCGCGTCCCGGTGCCCAGCAACAATGCCTGGGGCCTCAAAAAGTAG
- Protein Sequence
- MAEYWQQQQLPQQPQSTPQQQQLTNGAAAAAHNDSSSGAACNGHTSNSNNNYVNFNQFITQHNLHSYNMGSGGGAFGLTPNTSTSTASSSGSGSAANSTSNSSSSFGATPYALPLLGYQNGDSGQHYQGNGEGGGGGAAAYPHVYSPFGDNPFAAAPASGFDFSASKLHANAPEFVPNFAKLSLSTNSNNNNNNNTATQPEPMTHEQPATAAAAATASSNNSQHRQPKPLMASGNTGNSNTRQQQRRQDYREDRHEDRYERAKKPQKQQRYDNHRSNKRRDDWNRNRDRINGYPRAADELDTSNSNDSAQTSPEKQPQQQQQISPRRAPDNEKLSQREKLMRDIEQRRLECLVCVEQIKAHHGTWSCQNCYHVLHLKCTITWASSSKSAEGWRCPACQNVLEEVPREYNCFCGKLKNPPLTRNELAHTCGELCCRVEGCSHACTLLCHPGPCPPCQANVSRSCGCGRSSKMMQCAMKQQLQCESSCDKSLNCSEHRCQQLCHAGKCEPCGEQVEQHCHCGKQQREVLCTKESQDRRSYSCKECCSKPLPCGNHKCKDSCHAGACRPCKLSPQQITSCPCGKLPVPSTQRASCLDPVPTCDGVCSKTLRCGKPAHPHQCATKCHLGQCPPCPKQTAVKCRCGHMDQLIKCRQLSTRADDARCKRRCTKKRSCGKHKCNAECCIDIDHACPLPCNRTLSCGKHKCDQPCHRGNCPPCYRSSFEELYCECGAEVIYPPVPCGTKRPPCKRQCSRTHGCEHVPQHSCHAAASCPPCMMFTTKWCHGNHEQRKTIPCSQESFSCGLACGKPLACGRHKCIRPCHEGECPQQAGDVCRQSCTKPRLLCGHKCAAACHEGACPETPCKELVEVQCECGNRKQSRSCQELAREHSRIATAQLASSMAEMSRGNYMELSEILAPTKNSKSNKTLDCNDECRLLERNRRLAIGLQSRNPETQLKSLTKYSEFMRGFAKRNPLLTKSVYETLTDLVKLAKDSKQKSRSHSFPTMNREKRQMVHELCEVFGVESVSYDKEPNRNVVATAHKERCWLPATSVMEVLARESGQRRVPVPSNNAWGLKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00472738;
- 90% Identity
- -
- 80% Identity
- -