Basic Information

Insect: Drosophila borealis
Gene Symbol: stc
Assembly: GCA_035045885.1
Location: JAWNOR010000137.1:7668238-7672257[-]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 1.4 1.6e+04 -3.6 0.5 15 18 358 361 357 362 0.79

2 16 2 2.2e+04 -4.1 1.6 15 19 385 389 384 389 0.81

3 16 0.056 6.3e+02 0.8 2.0 4 11 418 425 417 426 0.90

4 16 5.8e-07 0.0065 16.8 15.1 1 19 430 447 430 447 0.93

5 16 1.7 1.9e+04 -3.9 0.9 6 10 473 477 472 477 0.88

6 16 2.2e-08 0.00025 21.3 13.6 1 18 483 500 483 501 0.98

7 16 2 2.2e+04 -6.2 4.1 7 13 505 511 505 512 0.77

8 16 2e-09 2.2e-05 24.6 12.9 1 19 541 559 541 559 0.98

9 16 1.1 1.3e+04 -3.3 0.5 5 10 589 594 589 594 0.90

10 16 2.4e-05 0.27 11.6 17.0 4 19 607 622 600 622 0.88

11 16 0.065 7.3e+02 0.6 11.7 1 11 662 672 662 684 0.79

12 16 2.8e-10 3.1e-06 27.4 15.1 1 18 689 706 689 707 0.97

13 16 2 2.2e+04 -4.4 1.2 6 10 736 740 736 740 0.88

14 16 2 2.2e+04 -7.5 10.6 10 18 754 763 743 764 0.78

15 16 2e-07 0.0023 18.2 15.0 1 16 800 815 800 825 0.93

16 16 5.4e-07 0.006 16.9 12.9 1 19 832 851 832 851 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	1.4	1.6e+04	-3.6	0.5	15	18	358	361	357	362	0.79
2	16	2	2.2e+04	-4.1	1.6	15	19	385	389	384	389	0.81
3	16	0.056	6.3e+02	0.8	2.0	4	11	418	425	417	426	0.90
4	16	5.8e-07	0.0065	16.8	15.1	1	19	430	447	430	447	0.93
5	16	1.7	1.9e+04	-3.9	0.9	6	10	473	477	472	477	0.88
6	16	2.2e-08	0.00025	21.3	13.6	1	18	483	500	483	501	0.98
7	16	2	2.2e+04	-6.2	4.1	7	13	505	511	505	512	0.77
8	16	2e-09	2.2e-05	24.6	12.9	1	19	541	559	541	559	0.98
9	16	1.1	1.3e+04	-3.3	0.5	5	10	589	594	589	594	0.90
10	16	2.4e-05	0.27	11.6	17.0	4	19	607	622	600	622	0.88
11	16	0.065	7.3e+02	0.6	11.7	1	11	662	672	662	684	0.79
12	16	2.8e-10	3.1e-06	27.4	15.1	1	18	689	706	689	707	0.97
13	16	2	2.2e+04	-4.4	1.2	6	10	736	740	736	740	0.88
14	16	2	2.2e+04	-7.5	10.6	10	18	754	763	743	764	0.78
15	16	2e-07	0.0023	18.2	15.0	1	16	800	815	800	825	0.93
16	16	5.4e-07	0.006	16.9	12.9	1	19	832	851	832	851	0.96

Sequence Information

Coding Sequence: ATGGCCGAGTattggcagcaacagcagcagcagcagctggtaACGAACGGTGCTGACGCAGCGCCTGCTGCGGACGCCTCAACCACAGCGAAtgggcacaacaacaacaacaactatgtgaattttaatcaatttatcaCACAACACAACTTGGCCAGCTCGAGTGTGGGCTACAGCattggcggtggcggcggcgccTTTGGCCTGacgcccagcagcagcgccaccaGCAAtttcggcggcggcggcggcggcaacTTGTATGCGCCAACGTTTTATGCCTCTCAAAATGGCGATGGCGGCGCAAGTGGGAACAGTTATAATGCAGCCGCGGCCGCAGCCGCTGCTTATCCCAATCTTTATACACCCTTTGGAAATAATCCgtttgctgccgctggcgTTGGCTACGATTTCAGCGCTTCCAAGCTGCAGGCCACAGCGCCCGAATTTGTGCCCAATTTTGCCAAGCTCAGTCTGACGTCGGCGTCAGAGacgacggcaacggcggctTCGCCGTCAGCGTCGGCGTCTAGCAAAAatcataacaacaacaacactgcCACACAgccaaatgcagcagcagcagcagcaggcagcaatTCTTCACAGCactcgcagccgcagcagctgccacaaaGAGCCGACCAGAGGCAGCCGAGGCCGcatggcagcggcaacaatagTCGCCAGCAGCGACGCAACGACTACCGCGAGGATCGCAACGAGGAGCGCTATGAGCGCGGCAAGAAACCGCAGAAGCAACAGCGCTACGACAATCACCGCAGCAATAAGCGACGCGACGATTGGAATCGCAATCGGGATCGCATCAATGGCTATCCACGCGCCAACGAGGAGTTGGAcacaagcaacagcaatgaCAGCGCGCAGCCGTCGCCAGAGAAGCAGTCGTCGCAACATCAGCttcaccagcagcaacaaatctCACCAAGACGCGCGCCCGATCATGAAAAGCTGTCGCAGCGGGAAAAGCTAATGCGCGACATTGAGCAGCGGCGTCTGGAGTGCCTGGTCTGTGTGGAGCTGATTAAGGCGCATCATGGCACCTGGTCGTGCCAGAATTGTTATCATGTGCTGCATCTGAAGTGCACCATCACCTGGGCAAGCAGCTCGAAATCCGCCGAGGGCTGGCGTTGCCCCGCCTGCCAGAATGTGCTGGAGGAGCTGCCGCGCGAATATTTGTGCTTCTGTGGCAAACTCAAGAATCCACCGTTGACGCGCACCGAACTAGCCCATAGCTGCGGTGAGCTGTGCTGCCGTGTCGAGGGCTGCAGCCATGCGTGCACGCTGCTCTGCCATCCCGGTCCGTGTCCGCCATGCCAGGCGAATGTCAgtcgcagctgcggctgcgggCGCACCTCCAAGCTGATGCAGTGCGCCATGAAGCAGCCACTGCAGTGTGAGGCGATTTGCGACAAGCTGCTCAACTGCGGAGAGCATCGTTGCCAGCAGCCGTGCCATGCGGGCAAGTGTGAGGCGTGCGCGgagcaagtgcagcagcaTTGCCATTGCGGCAAACAGCAGCGCGAGGTGCAGTGCACCCGCGAGAGCCAGGATAAGCGCAGCTATTCGTGCAAAGAGTGCTGCAGCAAGCCGCTGCCCTGCGGCAATCATAAATGCAAGGATTCATGCCATGCCGGCGCCTGTCGTCCCTGCAAACTGAGTCCCACACAAATCACCAGCTGCCCCTGCGGCAAGCTGCCGGTGCCGGCAAcgcagcgcagcagctgcctggATCCGGTGCCCACCTGCGAGGGCGTCTGCGGCAAAACCCTGCGGTGCGGCAAACCCGCGCATCCGCATCAATGCGCCAGCAAATGCCACCTGGGCCAGTGCCCGCCCTGCCCCAAGCAAACGGCGGTCAAGTGCCGTTGCGGCCACATGGATCAGATGATCAAGTGCCGCCAGCTATCGACCCGTGCGGACGATGCGCGCTGCAAGCGACGCTGCACCAAGAAGCGCAGCTGTGGCAAGCACAAATGCAATGCCGAGTGCTGCATCGATATCGATCACGCCTGCCCGTTGCCCTGCAATCGAACGCTCAGCTGTGGCCGGCATAAATGCGATCAGCCCTGTCATCGTGGCAATTGCCCGCCCTGCTATCGCAGCAGCTTCGAGGAGCTGTACTGTGAGTGCGGCGCAGAGGTCATTTATCCGCCGGTGCCATGCGGCACCAAGAAGCCAATCTGCAAGCGACCCTGTTCGCGGACGCACGGCTGCGAGCATCCACCACAGCATAATTGCCATGCGGCGTCCAGCTGCCCGCCCTGCATGATGTTCACCACCAAATGGTGCCATGGCAATCACGAACAGCGCAAGACCATACCCTGCTCCCAGGCGAGCTTCAGTTGTGGCCTAGCCTGCGGCAAGCCGCTCGCCTGCGGGCGCCACAAATGCATACGGCCATGTCATGAGGGCGAATGCCAGCAGCCGGGCGAACTGTGCCGGCAGAGTTGCACCAAGCCGCGTCCATTGTGCGGCCACAAGTGCGCGGCCGTATGTCATGAGGGCGTCTGTCCTGAAACGCCCTGCAAGGAGCTGGTCGAGGTGCAGTGCGACTGCGGCAATCGCAagcagagccgcagctgccaGGAGCTGGCACGGGAGCACAGTCGCATTGCCACCGCACAGCTGGCCTCCTCCATGGCGGAGATGTCGCGCGGCAACTACATGGAACTCAGCGAGATTCTGGCgcccaacaaaaacaataaatccAACAAAACcttGAACTGCAATGATGAGTGTCGTCTGTTGGAGCGTAATCGTCGCTTGGCTATTGGATTGCAGTCGCGTAATCCGGAGACGCAGCTCAAGTCGCTGACAAAGTACTCGGAGTTCTTGCGCGGCTTCGCCAAACGCAATCCGGCGCTGACCAAGAGCGTCTATGAAACACTCACCGATCTGGTCAAGCTGGCCAAGGAGAGCAAACAAAAGTCGAGAAGTCACTCGTTTCCCACAATGAATCGTGAGAAGCGTCAATTGGTGCATGAACTATGCGAAGTTTTTGGCGTGGAGTCTGTTTCCTACGACAAGGAGCCCAATCGTAATGTGGTTGCCACAGCGCACAAGGAGCGGTGCTGGCTACCAGCCACAAGCATCATGGAGGTGCTGGCACGTGAATCTGGACAACGTCGCGTGCCCGTGCCCAGCAACAATGCATGGAGCCTCAAAAAGTAG
Protein Sequence: MAEYWQQQQQQQLVTNGADAAPAADASTTANGHNNNNNYVNFNQFITQHNLASSSVGYSIGGGGGAFGLTPSSSATSNFGGGGGGNLYAPTFYASQNGDGGASGNSYNAAAAAAAAYPNLYTPFGNNPFAAAGVGYDFSASKLQATAPEFVPNFAKLSLTSASETTATAASPSASASSKNHNNNNTATQPNAAAAAAGSNSSQHSQPQQLPQRADQRQPRPHGSGNNSRQQRRNDYREDRNEERYERGKKPQKQQRYDNHRSNKRRDDWNRNRDRINGYPRANEELDTSNSNDSAQPSPEKQSSQHQLHQQQQISPRRAPDHEKLSQREKLMRDIEQRRLECLVCVELIKAHHGTWSCQNCYHVLHLKCTITWASSSKSAEGWRCPACQNVLEELPREYLCFCGKLKNPPLTRTELAHSCGELCCRVEGCSHACTLLCHPGPCPPCQANVSRSCGCGRTSKLMQCAMKQPLQCEAICDKLLNCGEHRCQQPCHAGKCEACAEQVQQHCHCGKQQREVQCTRESQDKRSYSCKECCSKPLPCGNHKCKDSCHAGACRPCKLSPTQITSCPCGKLPVPATQRSSCLDPVPTCEGVCGKTLRCGKPAHPHQCASKCHLGQCPPCPKQTAVKCRCGHMDQMIKCRQLSTRADDARCKRRCTKKRSCGKHKCNAECCIDIDHACPLPCNRTLSCGRHKCDQPCHRGNCPPCYRSSFEELYCECGAEVIYPPVPCGTKKPICKRPCSRTHGCEHPPQHNCHAASSCPPCMMFTTKWCHGNHEQRKTIPCSQASFSCGLACGKPLACGRHKCIRPCHEGECQQPGELCRQSCTKPRPLCGHKCAAVCHEGVCPETPCKELVEVQCDCGNRKQSRSCQELAREHSRIATAQLASSMAEMSRGNYMELSEILAPNKNNKSNKTLNCNDECRLLERNRRLAIGLQSRNPETQLKSLTKYSEFLRGFAKRNPALTKSVYETLTDLVKLAKESKQKSRSHSFPTMNREKRQLVHELCEVFGVESVSYDKEPNRNVVATAHKERCWLPATSIMEVLARESGQRRVPVPSNNAWSLKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00472738;
90% Identity: iTF_00551264;
80% Identity: -