Dari010496.1
Basic Information
- Insect
- Drosophila arizonae
- Gene Symbol
- stc
- Assembly
- GCA_001654025.1
- Location
- NW:8039692-8063218[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.4 8.6e+03 -3.7 0.5 15 18 367 370 366 371 0.79 2 14 2 1.2e+04 -4.1 1.6 15 19 394 398 393 398 0.81 3 14 0.057 3.4e+02 0.8 2.0 4 11 427 434 426 435 0.90 4 14 5.9e-07 0.0035 16.8 15.1 1 19 439 456 439 456 0.93 5 14 1.9e-08 0.00011 21.6 14.3 1 19 492 510 492 510 0.97 6 14 1.7 1e+04 -3.9 1.5 7 13 514 520 514 521 0.75 7 14 2e-09 1.2e-05 24.6 12.9 1 19 550 568 550 568 0.98 8 14 2.4e-05 0.14 11.6 17.0 4 19 616 631 609 631 0.88 9 14 0.062 3.7e+02 0.7 11.7 1 11 671 681 671 693 0.79 10 14 2.8e-10 1.7e-06 27.4 15.1 1 18 698 715 698 716 0.97 11 14 2 1.2e+04 -4.4 1.2 6 10 745 749 745 749 0.88 12 14 2 1.2e+04 -7.7 9.9 10 18 763 772 752 773 0.76 13 14 2.7e-07 0.0016 17.8 15.3 1 16 809 824 809 834 0.89 14 14 4.6e-08 0.00028 20.3 13.2 1 19 841 860 841 860 0.96
Sequence Information
- Coding Sequence
- ATGGCCGAgtattggcagcagcagcagcagccgcagcaacagcagcagctgccccaacagcagcaacaaccacaacagttGTCCCAACAACAGCTAACAAATGGAGCTGGAGATTCAGCATGCTCGAACACARCCAATGGCCactctaataataataattatgtaaattttaatcaatttatcagTCAACACAATTTGGCCAGTTCCGTTTATAATGTtagcggcggcggcgggggTGCCTTTGGCCTAACTCcaagcagcagcgccagcagcggctcTAATTTATATGCGCCACACTTTTATGGCAGCCAAAATGGCGACAGTTACAATGCAGCTGGCGCAGCCGTTGCCTATCCTGTGGTCTATCCAAATCCATATACATCCTTCGGCCCCAATCcgtttgctgcttctgctgctgcctcgacTGGCTACGATTTCAGCGCTTCCAAGCTTCAGGCAACAGCGCCCGAATTTGTGCCCAATTTTGCCAAGCTGAGTctaacagcggcagcaacagcgacagcaccGATAACAGAGAGTGACTCTGTTAAAAatcatagcaacaacaataacaacactgCCACACAGCCAAatggaggagcagcagtaacagcggCGTCGAGTGGGAATTCAGCTCAGCAGCCGCAACGAGTGGAGCCTAGACAATCGAAGAGTCAGGTCAGCAGtagcggtggcggcggtggcggcggcggcaacaacgGTCGCCAGCAGCGACGCAACGAATATCGCGAGGAGCGCAATGAGGAGCGGTATGAGCGCGGCAAGAAACCGCAGAAACAACAACGCTACGATAATCATCGCAGCAATAAACGACGCGATGATTGGAATCGTAATCGCGATCGCATCAATGGCTATCCACGCGCTGCTGAGGAGCTggacaccagcaacagcaacgacagtgCGCAGGCTTCGCCCGAGAAGCAAcaaaatcagcagcagcaacaaatctCGCCCAGGCGCGCACCGGAACTGGAGAAGCTGTCGCAGCGCGAGAAGCTAATGCGCGACATTGAGCAGCGCCGACTCGAGTGCCTCGTCTGCGTGGAGCTGATCAAGGCGCATCACGGCACCTGGTCGTGCCAGAACTGTTATCACGTGCTGCATCTGAAGTGCACCATCACCTGGGCGAGCAGCTCCAAGTCGAACGAGGGCTGGCGCTGTCCGGCCTGCCAGAATGTGCTGCAGGAGCTGCCGCGCGATTATCTCTGCTTCTGTGGCAAGCTCAAGAATCCGCCGTTGACGCGCAACGAGCTGGCCCACAGCTGCGGCGAGCTCTGCTGTCGCGTCGAGGGCTGCAGCCATGCGTGCACTCTGCTCTGTCATCCGGGTCCGTGTCCGCCGTGCCAGGCGAACGTGACgcgcagctgcggctgcggccgcACCTCCAAGATAATGCAGTGCGCCAtgaagcagccgctgcagtgCGACGCCATTTGCGACAAGCTGCTCAACTGCGGCGAGCATCGCTGCCAGCAGCCCTGCCATGCGGGCAAGTGCGAGGCGTGCTcggagcaggtgcagcagaACTGCCATTGCGGCAAGCAGCAGCGCGAGGTGCTGTGCACCCGGGAGACGCAGGACAAGCGCAGCTACTCGTGCAAGGAGTGCTGCGGCAAGCCCCTGCCGTGCGGCAATCACAAGTGCAAGGATTCGTGTCATGCCGGCGCCTGTCGCCCCTGCAAGCTGAGTCCCACCCAAATCACCAGCTGTCCCTGCGGCAAGCTGCCCGTGCCGGCGTcacagcgcagcagctgcctcgaTCCGGTGCCCACGTGCGAGGGCACGTGCAACAAGACGCTGCGCTGCGGCAAGCCAGCGCATCCCCATCAGTGCGCCAGCAAGTGCCACCTGGGCCAGTGTCCGCCCTGCCCGAAGCAGACGGCTGTGAAGTGCCGCTGCGGCCACATGGATCAGATGATCAAGTGCCGGCAGCTGTCGACTCGAGCGGACGATGCGCGCTGCAAGCGACGCTGCACCAAGAAGCGCAGCTGCGGCAAGCACAAATGCAACGCCGAGTGCTGCATCGATATCGATCACGCCTGTCCATTGCCCTGCAATCGCACGCTGACCTGCGGCCGGCACAAATGCGACCAGCCCTGCCATCGTGGCAATTGTCCGCCCTGCTACCGCAGCAGCTTCGAGGAGCTCTACTGCGAGTGCGGCGCCGAGGTCATCTATCCGCCGGTGCCCTGCGGCACCAAGAAACCCGTCTGCAAGCGCCCCTGCTCGCGCACCCACGGCTGCGAGCATCCACCGCAGCACAATTGCCATGCGGCGGCCACCTGCCCGCCCTGCATGATGTTCACCACGAAGTGGTGCCATGGCCAGCATGAGCAGCGCAAGACCATACCCTGCTCCCAGGCCAGCTTCAGCTGTGGCCTGGCCTGCGGCAAGCCGTTGTCCTGCGGCCGGCACAAGTGCATCCGGCCCTGCCACGATGGCGAGTGCCAGCAGACGGGCGAGCAGTGCCGCCAGAGCTGCACCAAGCCGCGCCTGCTCTGTGGCCACAAATGTGCCGCCGTCTGCCATGAGGGCGACTGCCCGGAGACGCCCTGCAAGGAGCTGGTCGAGGTGCAGTGCGAGTGCGGCAATCGCAAGCAGAATCGCAGCTGCCAGGAGCTGGCGCGCGAGCATAGTCGCATTGCCACCGCCCAGCTGGCGTCCTCCATGGCGGAGATGTCGCGCGGCAACTACATGGAGCTGAGTGAAATTCTGGCtcccaacaaaaacaacaagtcCAACAAAACCTTGGACTGCAATGAGGAGTGTCGCCTGCTGGAGCGCAATCGTCGCTTGGCCATTGGCCTGCAGTCGCGCAATCCGGACGCACAGCTGAAGCCGCTGACCAAGTACTCGGAATTCTTGCGTGGCTTTGCCAAGCGCAATCCGGCGCTAACTAAGAGCGTCTATGAAACGCTCACTGATCTGGTGAAGCTGGCCAAGGAGAGCAAACAGAAGTCGCGAAGTCACTCCTTTCCCACCATGAATCGTGAGAAGCGCCAGCTGGTGCATGAGCTGTGCGAGGTGTTTGGCGTGGAGTCCGTCTCCTATGACAAGGAGCCCAATCGCAATGTCGTTGCCACGGCGCACAAGGAACGCTGCTGGCTGCCGGCTACGAGCATCATGGAGGTGCTGGCACGTGAATCGGGGCAACGTCGCGTCCCAGTGCCCAGCAACAATGCTTGGGGCCTGAAGAAGTAG
- Protein Sequence
- MAEYWQQQQQPQQQQQLPQQQQQPQQLSQQQLTNGAGDSACSNTXNGHSNNNNYVNFNQFISQHNLASSVYNVSGGGGGAFGLTPSSSASSGSNLYAPHFYGSQNGDSYNAAGAAVAYPVVYPNPYTSFGPNPFAASAAASTGYDFSASKLQATAPEFVPNFAKLSLTAAATATAPITESDSVKNHSNNNNNTATQPNGGAAVTAASSGNSAQQPQRVEPRQSKSQVSSSGGGGGGGGNNGRQQRRNEYREERNEERYERGKKPQKQQRYDNHRSNKRRDDWNRNRDRINGYPRAAEELDTSNSNDSAQASPEKQQNQQQQQISPRRAPELEKLSQREKLMRDIEQRRLECLVCVELIKAHHGTWSCQNCYHVLHLKCTITWASSSKSNEGWRCPACQNVLQELPRDYLCFCGKLKNPPLTRNELAHSCGELCCRVEGCSHACTLLCHPGPCPPCQANVTRSCGCGRTSKIMQCAMKQPLQCDAICDKLLNCGEHRCQQPCHAGKCEACSEQVQQNCHCGKQQREVLCTRETQDKRSYSCKECCGKPLPCGNHKCKDSCHAGACRPCKLSPTQITSCPCGKLPVPASQRSSCLDPVPTCEGTCNKTLRCGKPAHPHQCASKCHLGQCPPCPKQTAVKCRCGHMDQMIKCRQLSTRADDARCKRRCTKKRSCGKHKCNAECCIDIDHACPLPCNRTLTCGRHKCDQPCHRGNCPPCYRSSFEELYCECGAEVIYPPVPCGTKKPVCKRPCSRTHGCEHPPQHNCHAAATCPPCMMFTTKWCHGQHEQRKTIPCSQASFSCGLACGKPLSCGRHKCIRPCHDGECQQTGEQCRQSCTKPRLLCGHKCAAVCHEGDCPETPCKELVEVQCECGNRKQNRSCQELAREHSRIATAQLASSMAEMSRGNYMELSEILAPNKNNKSNKTLDCNEECRLLERNRRLAIGLQSRNPDAQLKPLTKYSEFLRGFAKRNPALTKSVYETLTDLVKLAKESKQKSRSHSFPTMNREKRQLVHELCEVFGVESVSYDKEPNRNVVATAHKERCWLPATSIMEVLARESGQRRVPVPSNNAWGLKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00472738;
- 90% Identity
- iTF_00549946;
- 80% Identity
- -