Fvar004147.1
Basic Information
- Insect
- Frieseomelitta varia
- Gene Symbol
- Hr39
- Assembly
- GCA_011392965.1
- Location
- WNWW01000255.1:406214-410444[+]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.35 1.2e+03 -2.2 4.8 107 163 25 83 11 97 0.65 2 4 3 1e+04 -13.9 18.4 65 129 410 494 279 536 0.57 3 4 3.2e-08 0.00011 21.0 0.0 1 24 603 626 603 641 0.89 4 4 2.7e-72 9.1e-69 232.0 0.1 86 408 659 980 626 980 0.81
Sequence Information
- Coding Sequence
- ATGTCGGAGCAAAACGGGCCCAGCGAGGGCCCAGGTCCAGGCCCAGGCCCAGGGCCTGGTTCTGGCTGGTGGCCAGCCTCGCAATCCTGGAAAACGAATTCCTGCACCGCCGCCTCCTCATCCACTAGTTCAACCGTTCCAGACAGCTCCGCCTCCGTCTCTGCTTCCTGCACCACCACTACCTCCTCCCTGGCGACCACCACATCGGCCACTTCCTCGACTAGCTGCTGTTCCTCGACCCATGGCAATGGACCATCTGGAACGATCACTGCAGTCCGCTCTTCCGAAACAGGAAAGAATGTCTCTGTCACGACGATTAACGTACCTCCTAATCAGGATATGCACGAtgGCAAAGGTATATGCAAGTATCTTACCGGTCAAAACGGCGTGACAGTATCTGTAGTGTCAAGCTGTGGCTCCGTACTAGGGTGTGGAAATGCGAATGTCGCGTCAACCACGGGTATTGGCACCAGTACTGGGACGCAGAGTATTGGAATTGGAGTCAACGTCCTCAGCCAGAATACGGCGGATGACAATGCGGAGGACAGTGACGTCGAGATAAGCAAAATCGACTTTCGGGGGGTGAATTTACgtacgaaaaagaaacgagatgtATCGGGTAGCCAGAGTGGAGAGAAAATCGGTGATGGAGAGGTCGAAGATGGGAACGGCTGTTATGATGGGAATGACGCGTCTCAACAACAACCCGAGAGGCCCATGTCGTGGGAAGGAGAACTTTCTGACCAAGAAATGTCTTCCAATACAATTACAAATCAAGATACTCACGAAGATACATCAATGGAGGGTGTTCAAGTGTGTGGCCCGAGTCCGGGACCAATGGAGCAAAAATTTCCGATAAAACCAGAACCAGACTTTCAGTCCAATCCAAGATTCACGTTTGGTTCTTTTCACGATACAGGATTACCTTTGGTTCACGGCCAACAAATACAGCAACAACGCAACATCGAGAATCTTGAGCAGACGCAGCAAAACGATTTGCCTCTTCTCGTAGGAAAATTACTTGGTGGTTATAATAGTTCAACTCCAAATCACAGTCCGGTGTTGAATCCTAGACACCATTTGACAAAGCATAGCCATACAAGATCGCAGGTGCCGTCACCGGACTCGGCGATTCATTCCGCATACAGCGTATTCAGTTCTCCAACGCAAAGTCCTCACGCAGCTCGCCATTCCGCTCTAGGCACGGGAAGTCCAGTCCCGTCTTCGTCGCTGTCCTTGTCGCGACacagttttaataattccaCCTCTTCGTTGTCGCTCTCGTTATCACATTCGCTCTCGAGAAACAATTCGGATGCCTCGAGCAGCTGCTACAGCTACGGCTCTCTTAGTCCACCCACGCACTCGCCCGTTCAACAACCGAGACATCCGCAGCATCATCAGCATCAAGTTGCTCAAGGAAGTCCACTCCATCTACCAGCAACGGCCTCTCCCGTCATTGCACATCACTATTCTTCCTCTGCACCGGGTTCAGAGCTATCTCCAGAAGGACATGCTGCTACAGACGATCAGGAAGACTGCAGAATACCTTCAGCACCGTCTGGAATATCCACGAGACAGCAATTGATTAACAGCCCGTGTCCAATTTGTGGGGACAAGATCAGCGGTTTTCATTACGGGATATTCTCGTGCGAGTCGTGTAAGGGATTTTTTAAACGCACCGTCCAGAATCGAAAGAATTATGTGTGCCTTAGAGGCGCGGGCTGTCCAGTCACCGTCGCTACCAGGAAAAAATGCCCCGCCTGTAGATTTGACAAGTGCCTCAATATGGGTATGAAGCTCGAGGCGATCAGAGAGGATCGCACCAGAGGTGGCAGAAGTACGTATCAATGTACGTATACTCTTCCAGCAAGTCTTGTCGGTAGTCCCGCGAGTAACATCGCCAACGATAAATCAACCACGGGGGGAAATTGTAGTCCAGCTCCAGCTGGTAACGAACATCACTATCCGGCAAGGCACCACTCGAATCACTCGCATAAAATGCAAGTGGTACCCCAACTTCTACAGGATATCATGGATGTAGAACATTTATGGCATTACAATGACAATGATCGCATGACTGGGATTCAAAATGCAGGGATGAATCCGTCTAGAAACAACGATACAATGTTATTAGGTGTCAGAAGTAGCGGAGGATCTGGAATAGAGAACGACACAGATTCGAGTGTTGAGTGTTCCTCTAATGGAACCACAGGAAATGGCAATCCCAGTAACAGAAGAGACGACAGATCATGCTCTAGTGTTTCAAATGCTAGTAACGAACAATGTGCTGCATCCATTAGTAGCAGTTCTCAAATTAACAACACCAATGGTAATCCAACACAACATCCTGATTTCCTGTCAAACCTCTGCAACATCGCTGACCACCGACTCTATAAAATAGTGAAATGGTGCAAGAGTTTACCATTATTTAAGAACATTTCAATCGATGATCAAATctgtttgttaattaattcctGGTGCGAGCTACTGCTCTTCTCATGCTGTTTCCGCAGCATGAGCACTCCAGGTGAAATTAGAGTGTCTCTCGGCAAGTCGATTACACTAGAACAAGCTAGGCAGCTTGGTTTGGCGACCTGCATTGAGAGGATGCTTGCATTCACTAACAATTTGAGAAGGCTCCGAGTAGATCAATACGAATATGTGGCAATGAAGGTTATAGTGCTGTTAACTTCTGACACAAGTGAACTAAAAGAACCTGAAAAAGTTAGAGCATCTCAGGAAAAGGCTTTACAAGCCCTACAACAATATACTATAGCAAGGTATCCGGAAATGCCTGCTAAGTTTGGTGAATTATTATTGAGAATTCCAGATTTACAAAGAACATGCCAGGCAGGAAAGGAATTGTTAAGTGCGAAACGTGCTGAAGGAGAAGGCAGCTCATTTAATTTGTTGATGGAATTGTTGAGAGGAGatcattga
- Protein Sequence
- MSEQNGPSEGPGPGPGPGPGSGWWPASQSWKTNSCTAASSSTSSTVPDSSASVSASCTTTTSSLATTTSATSSTSCCSSTHGNGPSGTITAVRSSETGKNVSVTTINVPPNQDMHDGKGICKYLTGQNGVTVSVVSSCGSVLGCGNANVASTTGIGTSTGTQSIGIGVNVLSQNTADDNAEDSDVEISKIDFRGVNLRTKKKRDVSGSQSGEKIGDGEVEDGNGCYDGNDASQQQPERPMSWEGELSDQEMSSNTITNQDTHEDTSMEGVQVCGPSPGPMEQKFPIKPEPDFQSNPRFTFGSFHDTGLPLVHGQQIQQQRNIENLEQTQQNDLPLLVGKLLGGYNSSTPNHSPVLNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSALGTGSPVPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHPQHHQHQVAQGSPLHLPATASPVIAHHYSSSAPGSELSPEGHAATDDQEDCRIPSAPSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPASLVGSPASNIANDKSTTGGNCSPAPAGNEHHYPARHHSNHSHKMQVVPQLLQDIMDVEHLWHYNDNDRMTGIQNAGMNPSRNNDTMLLGVRSSGGSGIENDTDSSVECSSNGTTGNGNPSNRRDDRSCSSVSNASNEQCAASISSSSQINNTNGNPTQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQARQLGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00734001; iTF_00733975; iTF_00733984; iTF_00223937; iTF_00224612; iTF_00223914; iTF_00224592; iTF_00229410; iTF_00229380; iTF_00229391; iTF_00964514; iTF_00961863; iTF_00961865; iTF_00963253; iTF_00963225; iTF_00964538; iTF_00963227; iTF_00961887; iTF_00964512; iTF_00861955; iTF_00861902; iTF_00861914; iTF_01122467; iTF_01122470; iTF_01122507; iTF_01123120; iTF_01123095; iTF_01123098; iTF_01498275; iTF_01498246; iTF_01498255; iTF_01498257; iTF_00227333; iTF_00216422; iTF_00216454; iTF_00227310; iTF_00216434; iTF_00222562; iTF_00222550; iTF_00222585; iTF_00230054; iTF_00230088; iTF_00230065; iTF_00232006; iTF_00232039; iTF_00214447; iTF_00214416; iTF_00232016; iTF_00232018; iTF_00214425; iTF_00214427; iTF_00233255; iTF_00233288; iTF_00233266; iTF_00226632; iTF_00226662; iTF_00220617; iTF_00220619; iTF_00220640; iTF_00217130; iTF_00217099; iTF_00217110; iTF_00221297; iTF_00221321; iTF_00232657; iTF_00232628; iTF_00232637; iTF_00232639; iTF_00217783; iTF_00217804; iTF_00225975; iTF_00225953; iTF_00966053; iTF_00966060; iTF_00966062; iTF_00966077; iTF_00142497; iTF_00142499; iTF_00141862; iTF_00142514; iTF_00141880; iTF_00024674; iTF_00024645; iTF_00024658; iTF_00861187; iTF_00860462; iTF_00860433; iTF_00861233; iTF_00360932; iTF_00360964; iTF_00360942; iTF_00360272; iTF_00360254; iTF_00763268; iTF_00762612; iTF_00763291; iTF_00762590; iTF_01071044; iTF_01071053; iTF_01071055; iTF_01071068; iTF_00140627; iTF_00140645; iTF_00866741; iTF_00866761; iTF_00625528; iTF_00625560; iTF_00625530; iTF_00183321; iTF_00183340; iTF_00863994; iTF_00864039; iTF_00864703; iTF_00864677; iTF_00306342; iTF_00306292; iTF_00306304; iTF_00215048; iTF_00215081; iTF_00215059; iTF_00962569; iTF_00962549; iTF_00962551; iTF_00963881; iTF_00963883; iTF_00963903; iTF_01420969; iTF_01420330; iTF_01419694; iTF_01420982; iTF_01420314; iTF_01419676; iTF_01419678; iTF_00221962; iTF_00221934; iTF_00221943; iTF_00221945; iTF_00982346; iTF_00219149; iTF_00219173; iTF_00231374; iTF_00231343; iTF_00231354; iTF_00215745; iTF_00215733; iTF_00215767; iTF_00215743; iTF_00218451; iTF_00218485; iTF_00218463; iTF_00862639; iTF_00862604; iTF_00303056; iTF_00303067; iTF_00303164; iTF_00865360; iTF_00865390; iTF_01539632; iTF_01539666; iTF_01539645; iTF_00118050; iTF_00761032; iTF_00118068; iTF_00761015; iTF_00761017; iTF_00684199; iTF_00684201; iTF_00684218; iTF_00684191; iTF_01066317; iTF_01067651; iTF_01070403; iTF_01066982; iTF_01069033; iTF_01065610; iTF_01069706; iTF_01069003; iTF_01067669; iTF_01070421; iTF_01066294; iTF_01067639; iTF_01067000; iTF_01069016; iTF_01066970; iTF_01065599; iTF_01065631; iTF_01069727; iTF_01068337; iTF_01068354; iTF_01424437; iTF_01424421; iTF_01417745; iTF_01417762; iTF_00219832; iTF_00219855; iTF_00225272; iTF_00225296; iTF_00873849; iTF_00873833; iTF_01169211; iTF_01169235; iTF_01419035; iTF_01419049; iTF_00228028; iTF_00228006; iTF_00228733; iTF_00228708; iTF_00983005; iTF_00983022; iTF_00223230; iTF_00223253; iTF_00085471; iTF_00085416; iTF_00866048; iTF_00866073;
- 90% Identity
- iTF_00228733;
- 80% Identity
- iTF_00734001; iTF_00733975; iTF_00733984;