Hqua015333.1
Basic Information
- Insect
- Halictus quadricinctus
- Gene Symbol
- Hr39
- Assembly
- GCA_028454245.1
- Location
- CM052111.1:12241013-12249161[+]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 2 1.9e+04 -7.1 6.3 135 146 55 66 22 102 0.46 2 5 1.9 1.8e+04 -5.2 10.1 45 163 310 398 242 433 0.51 3 5 1.4 1.3e+04 -4.8 10.9 68 162 431 525 407 541 0.59 4 5 3.7e-08 0.00035 20.2 0.0 1 21 606 626 606 635 0.92 5 5 1.2e-69 1.1e-65 222.7 0.1 192 408 769 981 650 981 0.89
Sequence Information
- Coding Sequence
- ATGTCGGAGCAAAACGGGCCCAGCGAGGGCCCAGGGCCGGGTCCAGGGCCAGGTCCTGGCTGGTGGCCTACCTCGCAGTCTTGGAAGACGAGCTCCGTCGCGTCCGCTTCCTCGTCCGCTGGCTCGACTGCTTCAGACAGCTCCGCCTCCGTCTCTGCGTCCTGCACCGCCACTACCTCCTCCCTGGCAACTACCACTTCGGCTACCCCCTCGTCCAGCTGTTGTTCCTCGACTCCCGGCGGACACTCGTGCACCATCACCGCGGCCCGCACCTCCGAGACGGGCAAGAACGTCTCTGTTACGACGATTAATGTACCTCCGAATCAAGACTTACACGATGGAAAAGGTATCTGCAAGTACCTCACCGGCCAGAACGGCGTGACGGTGTCGGTAGTTTCGAGCTGCGGGTCCGTTCTGGGATGCGGGAACGCGAACGTGGTGTCCACGACGGGAATTGGGACGAGCACAGGTACCCATAGTATAGGCATCGGGATTGGAGTCGGTGTCCTCGGTCAGAACGCCGCCGAAAATGATGCCGAGGATAGCGACGGCGAAATAAGCAAGATTGACTTCCGAGGCGTGAATCTACGTACAAAGAAGAAACGAGATGTGTCCGGGAACGGTGAGAAAATCGGCGACGGCGACGTCGAAGACGGGAATGGCTGTTACGACGGGAACGATGTCTCGCAACAGCAGCCTGAGAGACCAATGTCGTGGGAAGGTGAACTATCGGATCAAGAAATGTCTTCCAATACTATCACAAATCAGGACACGCACGAGGAAACATCGATGGAAGGTGTCCAGGTTTGCGGTTCGAGTCCCGGGCCCATGGAGCAGAAGTTCCCCATAAAACCGGAGCCAGACTTCCGATCCAGTCCGGGATTCACGTTAGGTTCCTTCCACGACGTAGGTGTATCTCTGAGCCACGGTCAGCAGATGCAACAGCAACAGCAGCAGCAACAACAGCGAAACATAGAGAACATCGAGCAGACACAGCAGAGCGATTTGCCTCTACTCGTGGGGAAACTGCTCGGCGGTTACAACAGCTCCACCCCGAACCATAGTCCTGTGTTGAACCCGAGACATCACTTAACCAAACATAGCCACACGAGATCTCAGGTGCCGTCACCAGATTCCGCGATTCACTCCGCGTACAGTGTGTTCAGCTCGCCGACACAGAGTCCCCATGCAGCCCGGCACTCTGCCCTAGGAGCAGGAAGTCCAGTCCCGTCTTCGTCGTTGTCCCTCTCCCGACACAGTTTCAACAACTCGACTTCCTCGTTGTCGTTGTCGCTGTCACATTCGCTCTCGAGAAACAACTCGGACGCCTCGAGCAGCTGTTACAGCTACGGCTCTCTCAGTCCACCCACGCATTCTCCCGTCCAACAACCGAGGCATCCGCAGCATCATCAACACCAGGTTGCTCAGGGAAGTCCGCTCCACTTGCCGGCCACGGCTTCGTCCAGTGTTCCCCATCACTATTCCTCATCCGTGCCCGGTTCCGAGCTTTCTCCCGAAGCACACCCGACCGGAGACGACCAGGAAGACTGTCGAATACCCTCAGCTCCATCTGGCATCTCTACCAGACAGCAGTTAATCAACAGTCCCTGTCCAATATGTGGAGACAAGATCAGCGGCTTCCACTATGGAATATTCTCCTGCGAGTCGTGCAAGGGATTTTTTAAACGCACCGTCCAGAACCGGAAGAATTATGTGTGCCTTAGGGGCGCCGGTTGTCCGGTCACCGTCGCCACCAGGAAAAAGTGTCCGGCATGTCGGTTCGACAAATGTCTCAATATGGGTATGAAACTCGAAGCAATAAGAGAGGATCGAACGAGAGGCGGAAGAAGCACTTATCAATGTACCTACACTCTGCCAGCGAATCTGGTTGGTAGTCCTGCCAGCGGCATGACTGGCGACAAACTAGGAGCTGGCGGGAATTGCAGTCCGGCTCCAGCTGGTAGCGAACATCATTATTCTGTTAGGCATCATTCGAATCATTCGCATAAAATGCAAGTAGTGCCGCAGCTCCTACAGGATATCATGGACGTGGAGCATTTGTGGCACTACAACGACAACGATCGAATGTCTGGCGTACAGCCAGGGGGTGGGAGTGTTTCCAGAAACAACGAAGCTATGCTGTTAGGAGGTGTGGGATCTGGAACGGGGAACGATGCTGGGTCAGGTGTCGAGTGTTCTTCGAATGGGACCGCGGGGAATGGGAATTTAAATAACAGAAGAGATGGTAGATCGTGTCCCAACATTTCTAGTGTCGGCAACGATCAACGAGCGCCACCTGTAACCAGCAATTCTCAGTTAGGGAACAACACGAACGGCAATCCTACTCAGCATCCCGATTTCCTCTCGAACCTCTGCAATATCGCGGACCACCGACTCTACAAGATAGTGAAGTGGTGTAAAAGTCTGCCGTTGTTCAAGAACATCTCGATCGACGACCAGATTTGCCTGTTGATCAACTCCTGGTGCGAGCTGCTGCTCTTCTCGTGCTGCTTTCGCAGCATGAGCACGCCCGGTGAAATTAGAGTGTCTCTCGGCAAGTCGATTACATTGGAACAAGCGAGGCAACTTGGCTTGGCGACCTGTATCGAGAGGATGCTTGCATTTACCAATAATCTGAGAAGACTCAGAGTGGATCAGTACGAATACGTTGCGATGAAGGTGATAGTGCTATTAACCTCCGACACAAGTGAACTGAAGGAACCAGAGAAAGTGAGGGCATCTCAGGAGAAGGCTCTTCAGGCGTTGCAACAGTACACCATAGCAAGGTTCCCTGAGATGCCTGCTAAGTTTGGCGAATTATTATTGAGAATTCCAGACTTACAAAGGACGTGTCAGGCAGGGAAGGAATTGTTAAGCGCGAAACGTGCGGAAGGAGAAGGCAGCTCGTTCAATTTGTTGATGGAATTGTTGAGAGGAGATCATTGA
- Protein Sequence
- MSEQNGPSEGPGPGPGPGPGWWPTSQSWKTSSVASASSSAGSTASDSSASVSASCTATTSSLATTTSATPSSSCCSSTPGGHSCTITAARTSETGKNVSVTTINVPPNQDLHDGKGICKYLTGQNGVTVSVVSSCGSVLGCGNANVVSTTGIGTSTGTHSIGIGIGVGVLGQNAAENDAEDSDGEISKIDFRGVNLRTKKKRDVSGNGEKIGDGDVEDGNGCYDGNDVSQQQPERPMSWEGELSDQEMSSNTITNQDTHEETSMEGVQVCGSSPGPMEQKFPIKPEPDFRSSPGFTLGSFHDVGVSLSHGQQMQQQQQQQQQRNIENIEQTQQSDLPLLVGKLLGGYNSSTPNHSPVLNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSALGAGSPVPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHPQHHQHQVAQGSPLHLPATASSSVPHHYSSSVPGSELSPEAHPTGDDQEDCRIPSAPSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPANLVGSPASGMTGDKLGAGGNCSPAPAGSEHHYSVRHHSNHSHKMQVVPQLLQDIMDVEHLWHYNDNDRMSGVQPGGGSVSRNNEAMLLGGVGSGTGNDAGSGVECSSNGTAGNGNLNNRRDGRSCPNISSVGNDQRAPPVTSNSQLGNNTNGNPTQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQARQLGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARFPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00733987;
- 90% Identity
- iTF_00763268;
- 80% Identity
- iTF_00762612;