Lcal012882.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lasioglossum calceatum
Gene Symbol
Hr39
Assembly
GCA_963966675.1
Location
OZ016544.1:8150394-8156298[+]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 6 2 2.8e+04 -6.5 6.3 139 156 49 66 22 102 0.46
2 6 2 2.8e+04 -6.0 10.4 47 163 312 398 243 429 0.54
3 6 1.2 1.7e+04 -4.6 11.3 68 162 431 525 407 541 0.60
4 6 4e-08 0.00055 20.1 0.0 1 21 606 626 606 630 0.92
5 6 0.48 6.6e+03 -3.3 0.0 88 113 664 689 654 700 0.58
6 6 2.7e-70 3.7e-66 224.8 0.0 194 408 772 982 754 982 0.94

Sequence Information

Coding Sequence
ATGTCGGAGCAAAACGGGCCCAGTGAGGGCCCAGGGCCGGGTCCAGGACCAGGTCCTGGCTGGTGGCCTACCTCGCAGTCTTGGAAGACTAACTCCGCCGCATCCGCTTCCTCGTCTGCTGGCTCGACTGCTTCAGACAGCTCCGCCTCCGTCTCTGCGTCCTGCACCGCCTCTACCTCCTCCCTGGCAACTACCACTTCGGCTACCCCCTCGTCCAGCTGTTGTTCCTCGACTCCCGGCGGACACTCGTGCACCATCACCGCGGCCCGCACCTCCGAGACCGGCAAGAACGTCTCTGTTACGACGATCAATGTACCTCCGAATCAAGACTTACACGACGGGAAAGGTATCTGCAAGTACCTCACCGGCCAGAACGGCGTGACAGTGTCGGTAGTTTCGAGCTGCGGGTCTGTCCTTGGATGCGGGAACGCGAACGTGGTATCCACGACAGGAATTGGGACAAGCACGGGCACCCATAGCATAGGTATCGGGATTGGAGTCGGTGTCCTCGGTCAGAACGCCGTCGAAAACGATGCCGAGGATAGCGACGGTGAAATAAGCAAGATTGATTTCCGAGGCGTCAATCTACGTACAAAAAAGAAACGGGATGTATCCGGGAACGGTGAGAAAATCGGCGACGGTGACGTCGAAGACGGGAATGGCTGTTACGATGGAAACGACATCTCTCAACAGCAGCCTGAGAGACCCATGTCGTGGGAAGGTGAATTATCCGATCAAGAAATGTCTTCCAATACCATCACGAATCAGGACACGCATGAGGAAACATCGATGGAAGGTGTCCAGGTATGCGGTTCGAGTCCCGGGCCCATGGAGCAAAAGTTCCCCATAAAACCGGAGCCAGACTTCCGATCCAGTCCGGGGTTCACGTTAGGCTCGTTCCACGACGCAGGGATATCTCTGAGCCATGGCCAGCAgatgcaacagcaacagcagcagcaacagcagcggAACATAGAGAACATCGAGCAGACACAGCAAAGCGATTTGCCTCTTCTTGTGGGGAAACTGCTCGGCGGTTACAACAGCTCCACCCCGAATCACAGTCCCGTGTTGAATCCCAGACATCACTTGACCAAACATAGCCACACGAGATCTCAGGTGCCGTCACCAGATTCCGCGATTCACTCCGCGTACAGTGTGTTCAGCTCGCCGACACAGAGTCCGCACGCAGCCCGGCACTCTGCCCTAGGAGCAGGAAGTCCAGTCCCGTCTTCGTCGCTGTCCCTCTCCCGACACAGCTTCAACAACTCGACTTCCTCGTTATCGTTGTCGCTGTCACATTCGCTCTCGAGAAACAACTCGGACGCCTCGAGCAGCTGCTACAGCTACGGCTCTCTCAGTCCACCTACGCATTCTCCCGTCCAACAACCGAGGCATCCGCAGCATCATCAACACCAGGTTGCTCAAGGAAGTCCACTCCACTTGCCGGCCACGGCTTCGTCCAGTGTTCCCCATCACTATTCCTCAACCGTACCCGGTTCCGAGCTTTCTCCCGAAGCACACCCCACCGGAGACGACCAGGAAGACTGTCGAATACCCTCGGCTCCATCTGGTATCTCTACCAGACAGCAGTTGATCAATAGTCCCTGTCCAATATGCGGAGACAAGATCAGCGGCTTCCACTATGGCATATTCTCCTGCGAGTCATGCAAGGGATTCTTTAAACGCACCGTCCAGAACCGGAAGAATTATGTGTGCCTTAGGGGCGCCGGTTGTCCGGTCACCGTCGCCACCAGGAAAAAGTGTCCGGCATGTCGGTTCGACAAATGTCTCAATATGGGTATGAAACTCGAAGCAATTAGAGAGGATCGAACGAGAGGCGGAAGAAGCACTTATCAATGTACCTACACTCTGCCAGCGAATTTGGTTGGTAGTCCTGCCGGCGGCATGCCTGGCGACAAACTAGGTGCTGGCGGGAACTGTAGTCCGGCTCCAGCTGGTAGCGAACATCATTATTCTGTCAGGCATCATTCAAATCATTCGCATAAGATGCAAGTAGTGCCGCAGCTTCTGCAGGACATCATGGACGTGGAGCATTTGTGGCACTACAACGACAACGATCGAATGTCTGGTGTACAGCCAGGTGGTGGTGGGAGTGTTTCCAGAAACAACGATGGTATGCTGTTAGGAGGTGTGGGATCTGGAACGGGGAACGATGCTGGGTCAGGAGTAGAGTGTTCGTCGAATGGGACCGCGGGGAATGGGAATTTAAATAACAGAAGAGATGGCAGATCGTGTCCGAATATTTCTAGTGTCGGCAACGACCAACGGGCACCACCTGTCAACAGTAATTCTCAGTTAGGGAACAACACGAACGGCAACCCTACTCAGCATCCCGATTTCCTCTCGAACCTTTGCAATATCGCGGACCACCGACTCTACAAGATAGTGAAGTGGTGTAAAAGTCTGCCGTTGTTCAAGAATATCTCGATCGACGACCAGATTTGCCTGTTGATCAACTCCTGGTGCGAGCTGCTGCTCTTCTCGTGCTGCTTTCGCAGCATGAGCACGCCCGGTGAAATCAGAGTGTCTCTCGGCAAGTCGATTACATTGGAACAAGCGAGGCAACTCGGCTTGGCGACCTGTATCGAGAGGATGCTCGCGTTTACCAATAATCTGAGAAGACTCAGAGTGGATCAGTACGAATACGTTGCGATGAAGGTGATAGTGCTATTAACCTCCGACACAAGTGAACTGAAGGAGCCAGAGAAAGTGAGGGCGTCTCAGGAGAAGGCTCTTCAGGCGTTGCAACAGTACACTATAGCAAGGTACCCTGAGATGCCTGCTAAGTTTGGCGAATTGTTGCTGAGAATTCCAGACTTACAAAGGACGTGTCAGGCAGGGAAGGAATTATTAAGCGCCAAACGTGCGGAAGGAGAAGGCAGCTCGTTCAACTTGTTGATGGAATTGTTGAGAGGAGATCATTGA
Protein Sequence
MSEQNGPSEGPGPGPGPGPGWWPTSQSWKTNSAASASSSAGSTASDSSASVSASCTASTSSLATTTSATPSSSCCSSTPGGHSCTITAARTSETGKNVSVTTINVPPNQDLHDGKGICKYLTGQNGVTVSVVSSCGSVLGCGNANVVSTTGIGTSTGTHSIGIGIGVGVLGQNAVENDAEDSDGEISKIDFRGVNLRTKKKRDVSGNGEKIGDGDVEDGNGCYDGNDISQQQPERPMSWEGELSDQEMSSNTITNQDTHEETSMEGVQVCGSSPGPMEQKFPIKPEPDFRSSPGFTLGSFHDAGISLSHGQQMQQQQQQQQQRNIENIEQTQQSDLPLLVGKLLGGYNSSTPNHSPVLNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSALGAGSPVPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHPQHHQHQVAQGSPLHLPATASSSVPHHYSSTVPGSELSPEAHPTGDDQEDCRIPSAPSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPANLVGSPAGGMPGDKLGAGGNCSPAPAGSEHHYSVRHHSNHSHKMQVVPQLLQDIMDVEHLWHYNDNDRMSGVQPGGGGSVSRNNDGMLLGGVGSGTGNDAGSGVECSSNGTAGNGNLNNRRDGRSCPNISSVGNDQRAPPVNSNSQLGNNTNGNPTQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQARQLGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00733987;
90% Identity
iTF_00763268;
80% Identity
iTF_00861233;