Bdah011658.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bombus dahlbomii
Gene Symbol
Hr39
Assembly
GCA_037178635.1
Location
CM074109.1:15212186-15222200[-]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 3 2.3e+04 -6.1 5.7 87 154 49 65 22 93 0.43
2 5 1.5 1.1e+04 -4.3 7.6 71 163 311 402 254 435 0.56
3 5 3 2.3e+04 -12.4 18.7 44 132 397 505 369 542 0.53
4 5 1.6e-07 0.0012 18.6 0.1 1 19 609 627 609 632 0.95
5 5 9.1e-72 6.8e-68 230.3 0.1 82 408 661 986 631 986 0.79

Sequence Information

Coding Sequence
ATGTCGGAGCAAAACGGGCCCAGCGAGGGCCCTGGACCGGGCCCAGGGCCGGGTCCTGGTTGGTGGCCAACCTCACAGTCCTGGAAAACAAACTCCTGCACCGCTGCTGCCTCCTCGTCCACTTGTTCGACCATTTCAGAAAACTCCGCCTCCGTCTCTGCCTCTTGCACCACCTCTACGTCCTCCCTGGCGACCACCACATCGGCCACTTCATCGACCAGCTGCTGTTCCTCCAGCCCTGGCGGTCCTGGTGGACCGTCTTGCACGATCACCGCGTCCCGCTCCTCCGAAACGGGAAAGAACGTCTCCGTCACGACGATCAATGTACCCCCTAATCAGGATATGCACGATGGCAAGGGTATATGCAAGTATCTTGGCGGCCAGAATGGCGTGACAGTATCGGTAGTGTCAAACTGTGGCTCCGTACTGGGATGTGGAAACGCGAACGTTGTGTCTACCACGGGGATAGGCAGTAGCACCGGCACACAGAGTATCGGCATCGGAGTGAACATCCTCGACCAGAGCACGGCGGATGACGACGCGGAGGATAGCGACGTTGAGATAAGCAAAATCGACTTCCGAGGGGTGAATTTGCgtacgaagaagaaacgagacgTGTCTGGTAGTCAGAGTCAAAGCGGGGAGAAAATCGGCGATGGTGGAGAGGTGGAGGATGCGAACGGTTGTTACGATGGAAGCGACGCGTCTCAGCAACAACCGGAGAGGCCTATGTCATGGGAGGGAGAACTATCCGATCAAGAAATGTCTTCCAATACGATTACGAATCAAGATACGCACGAGGACACGTCAATGGAGGGTGTTCAAGTATGTGGCACGAGTCCCGGACCAATGGAACaaaaatttcccataaaacCGGAGCCAGATTTCCAGTCGAACCCAGGTTTCACGTTTGGCTCTTTTCACGACACCGGATTACCTCTGAATCACGGCCAGCAAatacaacaacagcaacaacagcgCAACATTGAGAATCTTGAACAGACGCAACAAAACGATTTGCCTCTTCTCGTAGGAAAATTACTTGGCGGTTACAATAGTTCGACTCCGAATCACAGTCCAGTGTTGAATCCTAGACACCATCTAACAAAGCATAGCCACACGAGATCGCAGGTGCCGTCACCGGACTCGGCCATTCATTCCGCATACAGCGTATTCAGCTCCCCGACGCAAAGTCCTCACGCAACTCGCCACTCGCCCCTGGGCGCGGCAAGTCCAGTTCCATCTTCGTCGCTATCCTTGTCGCGACACAGTTTCAACAATTCCACCTCCTCGTTGTCGCTCTCGTTGTCACACTCCCTCTCGAGAAACAATTCGGACGCCTCGAGCAGCTGCTACAGCTACGGCTCTCTCAGCCCACCCACACACTCGCCCGTCCAGCAACCGAGACATCCGCAGCATCACCAGCATCAAGTTGCTCAAGGAAGCCCGCTTCATCTGCCGGCGACCGCATCTTCCGCCGTTACTCATCACTACAATTCCACCGCACCGGCTTCTGAAATATCTACGGAGGGATACGTTGCGGACGATCAGGAAGACTGTAGAATACCCTCGGCACCGTCCGGTATATCCACAAGGCAGCAACTAATTAATACCCCGTGTCCAATTTGCGGGGATAAGATCAGTGGTTTTCATTATGGAATATTCTCGTGCGAGTCGTGCAAGGGATTTTTCAAACGCACCGTCCAGAATCGAAAGAATTATGTGTGCCTTAGAGGCGCGGGCTGTCCAGTCACCGTTGTTACCAGGAAAAAATGCCCCGCCTGCAGATTCGAAAAGTGCCTCAATATGGGTATGAAGCTCGAGGCGATTAGGGAGGATCGCACCAGGGGTGGCAGAAGTACCTATCAGTGTACATATACTTTTCCACCAAATTTTGTCGGTAGTTCTGCAAGTAACATGACCAGCGACAAATTAGCTACCGGAGGAAATTGTAGTCCAGCTCCGGCTGGTAACGAACATCACTATGCGGCAAGGCACCATTCGAATCACTCGCATAAGATGCAAGTGGTACCGCAACTTCTACAGGATATCATGGACGTGGAGCACTTGTGGCATTACAATGATAACGATCGTATGACTGGGATTCAAAACGCAGGAACGAATTTTACTAGAAACAACGATTCAATGTTATCGAGTGTTAGAAGCAACGGAGGATCTGGAATAGAGAACGACGCAGGTTCTGGTATCGAGTGTTCCTCGAATAGAACTACAGGAAATGGTAATCCTAGTAATAGAAGAGACAACAGATCATGCTCCAATGTTTCTAACGTTGCTAACGAACAACATGCTGCACCCGTTGGTAACAGTTCTCAAATCAACAATACGAATTGTAATCCAACTCAACATCCTGATTTTCTGTCGAACCTCTGCAATATCGCTGATCATCGACTCTACAAAATAGTGAAGTGGTGCAAGAGTTTGCcgttatttaaaaacatttcgaTCGATGATCAGATCTGTCTGTTGATTAATTCTTGGTGCGAGCTGCTGCTCTTCTCGTGCTGCTTTCGCAGTATGAGCACTCCCGGTGAAATTAGAGTGTCTCTCGGTAAGTCGATTACACTGGAACAAGCCAGGCAGCTTGGCTTAGCGACCTGCATCGAGAGGATGCTTGCATTTACTAACAATTTGAGAAGGCTCCGAGTAGATCAGTACGAATACGTGGCGATGAAGgTAATAGTACTGTTGACCTCTGATACAAGTGAACTGAAAGAACCTGAAAAAGTTAGAGCATCTCAGGAGAAGGCTTTACAAGCATTGCAACAATATACTATCGCAAGGTATCCAGAAATGCCTGCTAAGTTTGGTGAATTATTATTGAGAATTCCAGATTTACAAAGAACATGCCAAGCAGGAAAGGAATTATTAAGCGCTAAACGTGCTGAAGGAGAAGGCAGCTCGTTTAATCTGTTGATGGAATTGTTGAGAGGAGATCACTGA
Protein Sequence
MSEQNGPSEGPGPGPGPGPGWWPTSQSWKTNSCTAAASSSTCSTISENSASVSASCTTSTSSLATTTSATSSTSCCSSSPGGPGGPSCTITASRSSETGKNVSVTTINVPPNQDMHDGKGICKYLGGQNGVTVSVVSNCGSVLGCGNANVVSTTGIGSSTGTQSIGIGVNILDQSTADDDAEDSDVEISKIDFRGVNLRTKKKRDVSGSQSQSGEKIGDGGEVEDANGCYDGSDASQQQPERPMSWEGELSDQEMSSNTITNQDTHEDTSMEGVQVCGTSPGPMEQKFPIKPEPDFQSNPGFTFGSFHDTGLPLNHGQQIQQQQQQRNIENLEQTQQNDLPLLVGKLLGGYNSSTPNHSPVLNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHATRHSPLGAASPVPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHPQHHQHQVAQGSPLHLPATASSAVTHHYNSTAPASEISTEGYVADDQEDCRIPSAPSGISTRQQLINTPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVVTRKKCPACRFEKCLNMGMKLEAIREDRTRGGRSTYQCTYTFPPNFVGSSASNMTSDKLATGGNCSPAPAGNEHHYAARHHSNHSHKMQVVPQLLQDIMDVEHLWHYNDNDRMTGIQNAGTNFTRNNDSMLSSVRSNGGSGIENDAGSGIECSSNRTTGNGNPSNRRDNRSCSNVSNVANEQHAAPVGNSSQINNTNCNPTQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQARQLGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00733987;
90% Identity
iTF_00228733;
80% Identity
iTF_00218451;