Bpas012616.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bombus pascuorum
Gene Symbol
Hr39
Assembly
GCA_905332965.1
Location
HG995275.1:17389917-17420993[-]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 3 2.3e+04 -6.0 5.7 87 154 49 65 22 95 0.44
2 5 3 2.3e+04 -6.9 10.8 79 164 319 402 247 449 0.53
3 5 3 2.3e+04 -11.0 15.9 45 148 397 514 373 541 0.51
4 5 1.7e-07 0.0013 18.6 0.1 1 19 608 626 608 630 0.95
5 5 4.7e-71 3.5e-67 227.9 0.1 86 408 664 986 628 986 0.77

Sequence Information

Coding Sequence
ATGTCGGAGCAAAACGGGCCCAGCGAGGGCCCTGGACCGGGCCCAGGGCCGGGTCCCGGTTGGTGGCCAACCTCACAGTCCTGGAAAACGAACTCCTGCACCGCTGCTGCCTCCTCGTCCACTTGTTCGACCATTTCAGAAAACTCCGCCTCCGTCTCTGCCTCTTGCACCACCTCTACGTCCTCTCTGGCGACCACCACATCGGCCACTTCGTCGACCAGCTGCTGTTCCTCGAGCCCTGGCGGTCCTGGTGGACCGTCTTGCACCATCACCGCGACCCGCTCCTCCGAAACGGGAAAGAACGTCTCTGTCACGACGATCAATGTACCGCCTAATCAGGACATGCACGATGGCAAGGGTATATGCAAGTATCTTGGCGGCCAGAACGGCGTGACGGTATCGGTAGTGTCGAGCTGTGGCTCCGTACTGGGATGTGGAAACGCGAACGTTGTGTCTACCACGGGGATAGGCAACAGCACCGGCACACAGAGTATTGGCATCGGAGTGAACATCCTTGACCAGAACACGGCGGATGATGACGCGGAGGATAGCGACGTTGAGATAAGCAAAATCGACTTCCGAGGGGTGAATTTGCGTACGAAGAAGAAACGAGACGCGTCTGGTAGTCAGAGTCAAAGCGGGGAGAAAATCGGCGATGGAGAGGCCGAGGATGCGAACGGTTGTTACGATGGAAGCGACGCGTCTCAGCAACAACCGGAGAGGCCTATGTCATGGGAGGGAGAACTGTCCGATCAAGAAATGTCTTCCAATACGATTACAAATCAAGATACGCACGAGGACACGTCGATGGAGGGTGTTCAAGTATGCGGCACGAGTCCCGGACCAATGGAACAAAAATTTCCCATAAAACCGGAGCCAGATTTTCAGTCGAACCCAGGTTTCACGTTTGGATCTTTTCACGACACCGGATTACCTCTGAATCACGGCCAGCAAATACAACAACAGCAACAACAGCGCAACATCGAGAATCTCGAACAGACGCAACAAAACGATTTGCCTCTTCTCGTAGGAAAATTACTTGGCGGTTACAATAGTTCGACTCCGAATCACAGTCCAGTGTTGAATCCTAGACACCATCTAACGAAGCATAGCCACACGAGATCGCAGGTGCCGTCACCGGACTCGGCCATTCATTCCGCATACAGCGTATTCAGCTCCCCGACGCAAAGTCCTCACGCAACTCGCCACTCCCCCCTGGGCGCGGCGAGTCCAGTTCCATCTTCGTCGCTATCCTTGTCGCGACACAGTTTCAACAATTCCACTTCCTCGTTGTCGCTCTCGTTGTCACACTCCCTCTCGAGAAACAATTCGGACGCCTCGAGCAGCTGCTACAGCTACGGCTCTCTCAGCCCGCCCACGCACTCGCCCGTCCAGCAACCGAGACATCCGCAGCATCACCAGCATCAAGTTGCTCAAGGAAGCCCGCTTCATCTGCCAGCGACCGCTTCTCCCGCCGTTACTCATCACTACAATTCCACTGCACCGGGTTCCGAGCTATCTCCGGAAGGATACGTTGCAGACGATCAGGAAGACTGTAGAATACCCTCGGCACCGTCCGGTATATCCACGAGGCAGCAACTAATTAATACCCCGTGTCCAATTTGCGGGGATAAGATCAGTGGTTTTCATTATGGAATATTCTCGTGCGAGTCGTGCAAGGGATTTTTCAAACGCACCGTCCAGAATCGAAAGAATTACGTGTGCCTTAGAGGCGCGGGCTGTCCAGTCACCGTTGTTACCAGGAAAAAATGCCCCGCCTGCAGATTCGAGAAGTGCCTCAATATGGGTATGAAGCTCGAGGCGATCAGGGAGGATCGCACCAGGGGTGGCAGAAGTACCTATCAGTGTACATATACTTTTCCACCAAATTTTGTCGGTAGTTCTGCGAGTAACATGGCCAGCGACAAATTAACTACCGGAGGAAATTGTAGTCCGGCTCCGGCTGGTAACGAACATCACTATGCGGCAAGGCACCATTCGAATCACTCCCATAAGATGCAAGTGGTACCGCAACTTCTACAGGATATCATGGACGTAGAGCACTTGTGGCATTACAACGATAACGATCGTATGACTGGGATTCAAAACGCAGGAACGAATTTTACTAGAAACAACGATTCAATGTTATTGAGCGTTAGAAGCAACGGAGGAGGATCTGGAATAGAGAACGACACAGGTTCGGGTATCGAGTGTTCCTCCAATAGAACCACAGGAAATGGTAATCCTAGCAATAGAAGAGATAACAGGTCATGCTCCAATGTTTCTAACGTTGGTAACGAACAACATGCTGCACCCGTTGGTAACAGTTCTCAAATCAACAATACGAATTGCAATCCAACTCAACATCCTGATTTTCTGTCGAACCTCTGCAATATCGCTGATCATCGACTCTACAAAATAGTGAAGTGGTGCAAGAGTTTGCCGTTATTTAAAAACATTTCGATCGATGATCAGATCTGTCTGTTGATTAATTCTTGGTGCGAGCTACTGCTCTTCTCGTGCTGCTTTCGCAGTATGAGCACTCCCGGTGAAATTAGAGTGTCTCTCGGTAAGTCGATTACACTGGAACAAGCTAGGCAGCTTGGTTTAGCGACCTGCATCGAGAGGATGCTTGCGTTTACTAACAATTTGAGAAGGCTCCGAGTAGATCAGTACGAATACGTGGCGATGAAGGTAATAGTACTGTTGACCTCTGACACGAGTGAACTGAAAGAACCTGAAAAAGTTAGAGCATCTCAGGAAAAGGCTTTACAAGCATTGCAACAATATACTATCGCAAGGTATCCAGAAATGCCAGCTAAGTTTGGTGAATTATTATTGAGAATTCCAGATTTACAAAGAACATGCCAAGCAGGAAAGGAATTATTAAGTGCTAAACGTGCTGAAGGAGAAGGCAGCTCGTTTAATCTGTTGATGGAATTGTTGAGAGGAGATCACTGA
Protein Sequence
MSEQNGPSEGPGPGPGPGPGWWPTSQSWKTNSCTAAASSSTCSTISENSASVSASCTTSTSSLATTTSATSSTSCCSSSPGGPGGPSCTITATRSSETGKNVSVTTINVPPNQDMHDGKGICKYLGGQNGVTVSVVSSCGSVLGCGNANVVSTTGIGNSTGTQSIGIGVNILDQNTADDDAEDSDVEISKIDFRGVNLRTKKKRDASGSQSQSGEKIGDGEAEDANGCYDGSDASQQQPERPMSWEGELSDQEMSSNTITNQDTHEDTSMEGVQVCGTSPGPMEQKFPIKPEPDFQSNPGFTFGSFHDTGLPLNHGQQIQQQQQQRNIENLEQTQQNDLPLLVGKLLGGYNSSTPNHSPVLNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHATRHSPLGAASPVPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHPQHHQHQVAQGSPLHLPATASPAVTHHYNSTAPGSELSPEGYVADDQEDCRIPSAPSGISTRQQLINTPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVVTRKKCPACRFEKCLNMGMKLEAIREDRTRGGRSTYQCTYTFPPNFVGSSASNMASDKLTTGGNCSPAPAGNEHHYAARHHSNHSHKMQVVPQLLQDIMDVEHLWHYNDNDRMTGIQNAGTNFTRNNDSMLLSVRSNGGGSGIENDTGSGIECSSNRTTGNGNPSNRRDNRSCSNVSNVGNEQHAAPVGNSSQINNTNCNPTQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQARQLGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00733987;
90% Identity
iTF_00228733;
80% Identity
iTF_00224612;