Ccal000814.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ceratina calcarata
Gene Symbol
Hr39
Assembly
GCA_026724355.1
Location
JAKKRE010000003.1:10563270-10566774[+]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 2.5 2.2e+04 -5.0 7.5 115 170 45 100 22 114 0.63
2 5 1.7 1.5e+04 -4.4 13.6 42 160 309 421 295 437 0.51
3 5 3 2.7e+04 -5.3 9.6 70 160 436 526 412 542 0.58
4 5 2.9e-08 0.00026 21.1 0.0 1 24 608 631 608 649 0.87
5 5 9.2e-71 8.2e-67 227.0 0.0 180 408 758 981 634 981 0.80

Sequence Information

Coding Sequence
ATGTCGGAGCAAAACGGGCCCAGCGAGGGCCCAGGACCGGGACCGGGTCCAGGTCCCGGCTGGTGGTCAGCGCCTTCTTCGCAATCCTGGAAGTCGAACTCCTGCACTGCCCCGTCTTCCTCGTCCGCCGCTCCAGACAATGCTTCCGCCTCCGTCTCTGCCTCCTGCACCACCTCCACTTCCTCTCTGGCGACCACAACCTCGGCCACTTCGTCGACCAGCTGTTGCTCATCGACACCCAGCGGACCGTCGTGCACGATCACCGCAACTCGCTCCTCCGAGACGGGAAAAAATGTCTCTGTCACAACGATCAACGTACCTCCGAATCAAGATATGCACGATGGCAAAGGTATATGCAAATATCTCACCGGTCAGAATGGCGTAACAGTGTCCGTCGTTTCGAGCTGCGGTTCCGTGCCCGGCTGCGGGAACACAAATATCGTTTCGACAACGGGAATCGGTACTGGAACCGGGACGCAAAGCATCGGTATCGGGATCGGTGTCAACGTCTTAACACAGAACACGGTGGACGACGATGCAGAAGACAGTGATGTTGAAATTAGCAAAATCGATTTCCGAGGGGTGAATTTACGTACGAAGAAGAAACGGGAAGTATCTGGTGGCCAAAGCGGAGAGAAAATTGGCGACGGGGACACTGAGGATGGGGACACGTCCCAACAGCAACCAGAGAGGCCTATGTCATGGGAAGGAGAATTGTCTGATCAAGAAATGTCTTCCAATACTATTACAAATCAAGATACACACGAGGACACGTCCATGGAGGGTGTCCAAGTGTGCGGCGCGAGTCCTGGCCCCATGGAACAGAAGTTTCCCATAAAACCAGAGCCAGACTTTCGGACTAGTCCTGGATTTGGATTCAACTCATTCCATGATAcgggatcacccttgccccatggccaacagatacaacagcagcagcaacagcagcagcagcagcaacaacaacaacaacaacgcagtgttgaaaatcttgaacagactcaacaaaacgatttgccTCTCCTTGTGGGGAAATTACTTGGCGGTTACAATAGTTCAACTCCAAATCACAGCCCTGTATTAAATCCTAGACACCATCTGACCAAGCATAGCCATACGAGATCGCAGGTGCCGTCACCGGACTCGGCGATTCATTCCGCATACAGCGTATTCAGCTCCCCGACACAGAGTCCACATGCGGCTCGCCATTCCGCCCTGGGTGCCGGCAGCCCGGTTCCGTCCTCGTCGTTATCTCTGTCGCGACATAGCTTCAACAATTCGACCTCCTCGTTGTCTTTGTCGTTATCGCATTCGCTCTCGAGGAACAACTCTGATGCCTCGAGCAGTTGCTACAGCTACGGCTCTCTCAGCCCGCCCACGCACTCACCCGTCCAACAACCGAGACACCCACAGCATCATCAGCACCAGGTGGCCCAGGGCAGTCCGCTTCATCTGCCGGCGACAGCCTCGCCCGCTGTTCCTCATCATTATTCGTCGTCCGCCCCAGGCTCCGAGCTCTCTCCCGAAGGACACACCGCAGACGATCAAGAGGATTGTCGAATTCCCTCGGCACCATCCGGCATTTCCACCAGACAGCAACTGATCAACAGTCCAtgtccgatttgcggagacaaaattagcggtttccattatgggattttctcatgcgagtcctgcaaaggatttttcaaacgaaccgtccagaaccggaagaattatgtgtgccttagaggcgcgggctgcccggtcaccgtcgcaaccaggaagaaatgcccggcctgtagatttgacaagtgcctcaatatggGTATGAAGCTCGAAGCGATTAGAGAGGATCGTACCAGAGGCGGAAGAAGTACCTATCAGTGCACGTACACGCTTCCAGCCAGTCTGGTTGGGAGTCCAGCGAACAGCATGACCAGTGACAAGTTAGCCACAGGAGGAAATTGTAGTCCAGCACCAGCTGGCAGTGAATATCACTATAACGCCAGGCATTATTCGAATCACTCTCACAAGATCCAAGTAGTGCCGCAACTTTTGCAAGAAATCATGGACGTGGAACATTTGTGGCATTACAATGATAATGATCGCATGTCCGGGGTACAAGCCGGAGGCGCGAACGCGACTATAAATAGCGACACGATCTTAATGGGTAGTGGCGGTGGATCCGGAACCGATGCAGGCTCGGGTGTCGAGTGTTCTTCCGGTGGGACTGCGAGGAACGGTAATCCAAGCAGCAGAAGAGACGAGAGGTCGTGCTCGAACTCCTCCGCCGTCAATAGTGAGCAACGTGGCGGGCCTGTTAATAGCAGTTCTCAGATGAACAACACAAACGGTAATCCGAATCAGCGTCCCGACTTCCTATCGAACCTGTGCAACATAGCCGATCACCGACTTTACAAGATAGTGAAGTGGTGTAAAAGTTTGCCGCTGTTCAAGAACATTTCGATCGACGACCAAATTTGTTTGTTGATCAACTCCTGGTGCGAATTGCTGCTATTCTCGTGCTGCTTTCGCAGCATGAGCACTCCCGGTGAAATAAGAGTGTCTCTCGGCAAGTCGATTACGTTGGAACGTGCTAGACAGCTCGGCCTGGCGACTTGCATTGAGAGGATGCTCGCATTTACCAACAATCTCCGAAGACTCCGTGTAGATCAATATGAATATGTGGCAATGAAGGTAATAGTATTATTGACATCCGACACAAGCGAACTGAAAGAACCGGAAAAGGTGAGAGCATCTCAGGAGAAAGCGTTACAAGCGTTACAACAGTATACTATAGCGAGGTACCCGGAAATGCCTGCCAAGTTTGGCGAACTACTGTTGAGAATTCCGGATTTGCAAAGGACATGCCAAGCGGGAAAAGAATTGTTGAGTGCGAAACGTGCTGAAGGGGAAGGCAGCTCATTTAATTTGTTGATGGAATTATTGAGAGGAGATCATTGA
Protein Sequence
MSEQNGPSEGPGPGPGPGPGWWSAPSSQSWKSNSCTAPSSSSAAPDNASASVSASCTTSTSSLATTTSATSSTSCCSSTPSGPSCTITATRSSETGKNVSVTTINVPPNQDMHDGKGICKYLTGQNGVTVSVVSSCGSVPGCGNTNIVSTTGIGTGTGTQSIGIGIGVNVLTQNTVDDDAEDSDVEISKIDFRGVNLRTKKKREVSGGQSGEKIGDGDTEDGDTSQQQPERPMSWEGELSDQEMSSNTITNQDTHEDTSMEGVQVCGASPGPMEQKFPIKPEPDFRTSPGFGFNSFHDTGSPLPHGQQIQQQQQQQQQQQQQQQQRSVENLEQTQQNDLPLLVGKLLGGYNSSTPNHSPVLNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSALGAGSPVPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHPQHHQHQVAQGSPLHLPATASPAVPHHYSSSAPGSELSPEGHTADDQEDCRIPSAPSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPASLVGSPANSMTSDKLATGGNCSPAPAGSEYHYNARHYSNHSHKIQVVPQLLQEIMDVEHLWHYNDNDRMSGVQAGGANATINSDTILMGSGGGSGTDAGSGVECSSGGTARNGNPSSRRDERSCSNSSAVNSEQRGGPVNSSSQMNNTNGNPNQRPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLERARQLGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00733987;
90% Identity
iTF_01539632;
80% Identity
iTF_00303056;