Bbre012970.1
Basic Information
- Insect
- Bombus breviceps
- Gene Symbol
- Hr39
- Assembly
- GCA_014825925.1
- Location
- CM026182.1:12185785-12212954[-]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 3 1.6e+04 -5.7 5.3 124 163 42 66 22 88 0.42 2 5 1.4 7.4e+03 -4.2 7.9 62 153 319 414 256 441 0.51 3 5 3 1.6e+04 -11.5 17.6 44 146 394 510 367 540 0.53 4 5 1.7e-07 0.00091 18.5 0.1 1 19 607 625 607 628 0.95 5 5 3.2e-71 1.7e-67 228.5 0.3 182 408 767 984 627 984 0.79
Sequence Information
- Coding Sequence
- ATGTCGGAGCAAAACGGGCCCAGCGAGGGCCCTGGACCGGGCCCAGGGCCGGGTCCTGGTTGGTGGCCAACCTCACAGTCCTGGAAGACGAACTCCTGCACCGCTGCCTCCTCGTCTACATGTTCAACCGTTCCAGACAACTCCGCCTCCGTCTCTGCCTCTTGCACCACCTCTACGTCCTCCCTGGCGACCTCCACATCGGCCACTTCATCGACCAGCTGCTGTTCCTCCGGCAGCCCTGGCGGTGGACCGTCTTGCACGATCACCGCGGCCCGCTCCTCCGAAACGGGAAAGAACGTCTCTGTCACGACGATCAATGTACCCCCTAATCAGGACATGCACAATGGCAAGGGTATATGCAAGTATGTTGGCGGTCAGAATGGCGTGACAGTATCGGTAGTGTCGAGCTGTGGCTCCATACTGGGATGTGGAAACGCGAATGTTGTGTCTACCACAGGGATAGGCAGTAGCACCGGCACACAGAGTATTGGCATCGGAGTGAACATCGTTGACCAGAGCACGGCGGACGACGACGCGGAGGATAGCGACGTTGAGATAAGCAAAATCGACTTCCGAGGGGTGAATTTGCgtacgaagaagaaacgagacgTGTCTGGTAGTCAGAGTCAAAGCGGGGAGAAAATCGGCGATGGAGAGGTCGAGGATGGGAACGGTTGTTACGATGGAAGCGATGCGTCTCAGCAACAACCGGAGAGGCCCATGTCATGGGAGGGAGAACTATCCGATCAAGAAATGTCTTCCAATACGATTACAAATCAAGATACACACGAGGACACGTCAATGGAGGGTGTTCAAGTATGTGGCGCGAGTCCCGGGCCAATGGAACaaaaatttcccataaaacCGGAACCAGATTTTCAGTCCAACCCAGGTTTCACGTTTGGCTCTTTTCACGACACCGGATTGCCTCTGAATCACGGCCAGCAAatacaacaacagcaacaacagcgCAACATCGAGAACCTTGAACAAACACAACAAAACGATTTGCCTCTTCTCGTAGGAAAATTACTTGGCGGTTACAATAATTCGACTCCGAATCACAGTCCAGTGTTGAATCCTAGACACCATTTAACAAAGCATAGCCACGCGAGATCGCAGGTGCCGTCACCGGACTCGGCCATTCATTCCGCATACAGCGTATTCAGTTCCCCGACGCAAAGTCCTCACGCAACTCGCCACTCCCCCCTGGGCGCGGCAAGTCCAGTTCCATCTTCGTCGCTATCCTTGTCGCGACACAGTTTCAACAATTCCACTTCCTCGTTGTCGCTCTCGTTGTCACACTCCCTCTCGAGAAACAATTCGGACGCCTCGAGCAGCTGCTACAGCTACGGCTCTCTCAGCCCACCCACACATTCGCCCGTCCAGCAACCGAGACATCCGCAGCATCACCAGCATCAAGTTGCTCAAGGAAGTCCGCTTCATCTGCCAGCAACCGCTTCTCCCGCCATTACTCATCACTACGCTTCCTCTGCACCGGGTTCCGAGCTATCTCCAGAAGGACACGCTGCTACGGACGATCAGGAAGACTGTAGAATACCCTCGGCACCGTCTGGTATATCCACAAGGCAGCAACTAATCAATACCCCGTGTCCAATTTGCGGGGATAAGATCAGTGGTTTTCATTACGGAATATTCTCGTGCGAGTCGTGCAAGGGATTTTTCAAACGCACCGTCCAGAATCGAAAGAATTACGTGTGCCTTAGAGGCGCGGGCTGTCCAGTCACCGTTGTTACCAGGAAAAAATGCCCCGCCTGCAGATTCGAAAAGTGCCTCAATATGGGTATGAAGCTCGAGGCGATTAGGGAGGATCGCACGAGGGGTGGCAGAAGTACCTATCAGTGTACATATACTTTTCCACCAAATTTTGTCGGTAGTCCCGCAAGTAACATGTCCAGCGACAAATTAGCTACCGGAGGAAATTGTAGTCCAGCTCCAGCTGGTAACGAACATCACTATCCGGCAAGGCACCATTCGAATCACTCCCATAAGATGCAAATGGTACCGCAACTTCTACAGGATATCATGGACGTAGAGCACTTGTGGCATTACAATGATAACGATCGTATGACTGGGATTCAAAACGCAGGAACGAATCTTACTAGAAACAACGATTCAATGTTATTGGGTGTTAGAAGTAACGGAGGACCTGGAATAGAGAACGACACAGGTTCAGGTATCGAGTGTTCCTCCGATAGAACTACGGGAAATGGTAATCCTAGTAATAGAAGAGATAACAGATCATGCTCCAATGTTTCTACCGTTGGTAACGAACAACATGCCGCATCCGTTGCTAACAGTTCTCAAATCAACAATACGAATTGTAATCCAACTCAGCATCCTGATTTTCTGTCGAATCTCTGCAATATCGCTGATCATCGACTCTACAAAATAGTGAAGTGGTGCAAGAGTTTGCcgttatttaaaaacatttcgaTCGATGATCAGATCTGTCTGTTGATTAATTCTTGGTGCGAGCTACTGCTCTTCTCATGCTGCTTTCGCAGTATGAGCACTCCCGGTGAAATTAGAGTGTCTCTCGGTAAGTCGATTACACTGGAACAAGCTAGGCAGCTTGGCTTAGCGACCTGCATCGAGAGGATGCTTGCATTTACTAACAATTTGAGAAGGCTCCGAGTAGATCAGTACGAATACGTGGCGATGAAGgTAATAGTACTGTTGACCTCCGATACAAGTGAACTGAAGGAACCTGAAAAAGTTAGAGCGTCTCAGGAGAAGGCTTTACAAGCGTTGCAACAATATACTATCGCAAGGTACCCAGAAATGCCAGCTAAATTTGGTGAATTATTATTGAGAATTCCAGATTTACAAAGAACATGCCAAGCAGGAAAGGAATTATTAAGTGCTAAACGTGCTGAAGGAGAAGGCAGCTCGTTTAATCTGTTGATGGAATTGTTGAGAGGAGATCACTGA
- Protein Sequence
- MSEQNGPSEGPGPGPGPGPGWWPTSQSWKTNSCTAASSSTCSTVPDNSASVSASCTTSTSSLATSTSATSSTSCCSSGSPGGGPSCTITAARSSETGKNVSVTTINVPPNQDMHNGKGICKYVGGQNGVTVSVVSSCGSILGCGNANVVSTTGIGSSTGTQSIGIGVNIVDQSTADDDAEDSDVEISKIDFRGVNLRTKKKRDVSGSQSQSGEKIGDGEVEDGNGCYDGSDASQQQPERPMSWEGELSDQEMSSNTITNQDTHEDTSMEGVQVCGASPGPMEQKFPIKPEPDFQSNPGFTFGSFHDTGLPLNHGQQIQQQQQQRNIENLEQTQQNDLPLLVGKLLGGYNNSTPNHSPVLNPRHHLTKHSHARSQVPSPDSAIHSAYSVFSSPTQSPHATRHSPLGAASPVPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHPQHHQHQVAQGSPLHLPATASPAITHHYASSAPGSELSPEGHAATDDQEDCRIPSAPSGISTRQQLINTPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVVTRKKCPACRFEKCLNMGMKLEAIREDRTRGGRSTYQCTYTFPPNFVGSPASNMSSDKLATGGNCSPAPAGNEHHYPARHHSNHSHKMQMVPQLLQDIMDVEHLWHYNDNDRMTGIQNAGTNLTRNNDSMLLGVRSNGGPGIENDTGSGIECSSDRTTGNGNPSNRRDNRSCSNVSTVGNEQHAASVANSSQINNTNCNPTQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQARQLGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00733987;
- 90% Identity
- iTF_00228733;
- 80% Identity
- iTF_00215048;