Bwal013876.1
Basic Information
- Insect
- Bombus waltoni
- Gene Symbol
- Hr39
- Assembly
- GCA_014737395.1
- Location
- JACXII010000055.1:4020904-4050377[-]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 2.6 1.4e+04 -5.1 4.7 86 137 47 66 22 104 0.49 2 5 1.3 7e+03 -4.1 6.5 69 163 305 398 278 426 0.54 3 5 3 1.6e+04 -6.4 9.9 70 153 433 516 407 540 0.55 4 5 3.1e-08 0.00017 21.0 0.0 1 24 606 629 606 647 0.88 5 5 6e-72 3.2e-68 230.9 0.1 83 408 659 983 630 983 0.79
Sequence Information
- Coding Sequence
- ATGTCGGAGCAAAACGGGCCCAGCGAGGGCCCTGGACCGGGCCCAGGGCCGGGTCCTGGTTGGTGGCCAACCTCGCAGTCCTGGAAGACCAACTCCTGCACCGCTGCCTCCTCGTCCACTGGTTCAACCGTTGCAGACAACTCCGCCTCCGTCTCTGCCTCTTGCACCACCTCTACGTCCTCCCTGGCGACCACCACATCGGCCACTTCGTCGACCAGCTGCTGTTCCTCCACCCCTGGCGGTGGACCGTCTTGCACGATCACCGCGGCCCGCTCCTCCGAAACGGGAAAGAACGTCTCTGTCACGACGATCAACGTACCCCCTAATCAGGACATGCACGATGGCAAGGGTATATGCAAGTATCTTGCCGGGCAGAATGGCGTGACGGTATCGGTAGTGTCAAGCTGTGGCTCCGTATTAGGATGTGGAAACGCGAATGTCGTGTCTACTACGGGGATCGGTAGCAGCACCGGCACGCAGAGTATTGGCATCGGAGTGAACATCCTTGACCAGAGCACGGCGGATGATGACGCGGAGGATAGCGACGTTGAGATAAGCAAAATCGACTTCCGAGGGGTGAATTTGCGTACGAAGAAGAAACGAGACGTGTCTGGTAGTCATAGTCAAAGCGGGGAGAAGATCGGCGATGGAGAGATCGAGGATGGGAACGGTTGTTACGATGGAAACGATGCGTCTCAGCAACAACCGGAGAGGCCCATGTCGTGGGAGGGAGAACTATCCGATCAAGAAATGTCTTCCAATACGATTACAAATCAAGATACGCACGAGGACACGTCGATGGAGGGTGTTCAAGTATGTGGCGCGAGTCCCGGGCCAATGGAGCAAAAATTTCCCATAAAACCAGAGCCAGATTTTCAGTCCAACCCAGGATTTACGTTTGGCTCTTTTCACGACACCGGATTACCTCTGAATCACGGCCAGCAAATACAGCAACAGCAACAACAGCGCAACATTGAGAATCTTGAACAGACGCAACAAAACGATTTGCCTCTTCTCGTAGGAAAATTACTTGGTGGTTACAATAGTTCGACCCCAAATCATAGTCCAGTGTTGAATCCTAGACACCATCTAACAAAGCATAGCCACACGAGATCGCAGGTGCCGTCACCGGACTCGGCCATTCATTCCGCCTACAGCGTATTTAGCTCCCCGACGCAAAGTCCTCACGCAGCTCGCCACTCCGCCCTGGGCGCGGCAAGTCCAGTTCCATCTTCGTCGCTATCCTTGTCGCGACACAGTTTCAACAATTCCACTTCCTCGTTGTCGCTCTCGTTGTCACACTCCCTCTCGAGAAACAATTCGGACGCCTCGAGCAGCTGCTACAGCTACGGCTCTCTCAGCCCACCTACGCACTCGCCCGTCCAGCAACCGAGACATCCGCAGCATCACCAGCATCAAGTTGCTCAAGGAAGTCCGCTTCATCTGCCAGCAACCGCTTCTCCCGCCATTACTCATCACTACGCTTCCTCTGCACCGGGTTCTGAGCTATCCCCGGAAGGGCACGCTGCTACAGACGATCAGGAAGACTGTAGAATACCCTCGGCACCGTCTGGTATATCCACGAGGCAGCAACTAATTAACAGCCCGTGTCCAATTTGCGGGGATAAGATCAGTGGTTTTCATTATGGAATATTCTCGTGCGAGTCGTGCAAGGGATTTTTCAAACGCACCGTCCAGAATCGAAAGAATTATGTGTGCCTTAGAGGCGCGGGCTGTCCAGTCACCGTTGCTACCAGAAAAAAATGCCCCGCCTGCAGATTCGACAAGTGCCTCAATATGGGTATGAAGCTCGAGGCGATTAGGGAGGATCGCACCAGGGGTGGCAGAAGTACCTATCAATGTACATATACTCTTCCAGCAAGTCTTGTCGGTAGTCCTGCAAGTAACATGTCCAGCGACAAATTAGCTACCGGAGGGAATTGTAGTCCAGCTCCGGTTGGCAACGAACATCACTATTCGGCAAGGCATCATTCGAATCACTCGCATAAGATGCAAGTGGTACCGCAACTTCTACAGGATATCATGGATGTAGAGCACTTGTGGCATTACAATGATAACGATCGCATGACTTTGATTCAAAACGCAGCAACGAATCCTACTAGAAACAACGATTCGATGTTATTGAGCGTTAGAAGCAACGGAGGATCTGGAATAGAGAACGACACCGGTTCAGGTATCGAGTGTTCCTCGAACGGAACTGCAGGAAGTAGTAATCCTAGTAATAGAAGAGATAACAGATCATGCTCCAATGTTTCTAATGTTGGTAACGAACAACATGCTGCACCCGTTGGTAACAGCTCTCAAGTCAACAATACTAATGGTAATCCAACTCAACATCCTGATTTCCTGTCAAATCTCTGCAATATCGCTGATCATCGACTCTACAAAATAGTGAAATGGTGCAAGAGTTTGCCGCTATTTAAAAACATTTCGATCGATGATCAAATCTGTCTGTTAATTAATTCTTGGTGCGAGCTACTGCTCTTCTCGTGCTGCTTCCGCAGTATGAGCACTCCCGGTGAAATTAGAGTGTCTCTCGGTAAGTCGATTACACTGGAACAAGCTAGGCAGCTTGGCTTAGCGACCTGCATCGAGAGGATGCTTGCATTTACTAACAATTTGAGAAGGCTCCGAGTAGATCAGTACGAATACGTGGCGATGAAGGTAATAGTACTGTTGACCTCTGATACAAGCGAACTGAAAGAACCTGAAAAAGTTAGAGCATCTCAGGAAAAGGCTTTACAAGCATTGCAACAATATACTATCGCAAGGTACCCAGAAATGCCTGCTAAGTTTGGTGAATTATTATTGAGAATCCCAGATTTACAAAGAACATGCCAAGCAGGAAAGGAATTGTTAAGTGCTAAACGTGCTGAAGGAGAAGGCAGCTCGTTTAATCTGTTGATGGAATTGTTGAGAGGAGATCACTGA
- Protein Sequence
- MSEQNGPSEGPGPGPGPGPGWWPTSQSWKTNSCTAASSSTGSTVADNSASVSASCTTSTSSLATTTSATSSTSCCSSTPGGGPSCTITAARSSETGKNVSVTTINVPPNQDMHDGKGICKYLAGQNGVTVSVVSSCGSVLGCGNANVVSTTGIGSSTGTQSIGIGVNILDQSTADDDAEDSDVEISKIDFRGVNLRTKKKRDVSGSHSQSGEKIGDGEIEDGNGCYDGNDASQQQPERPMSWEGELSDQEMSSNTITNQDTHEDTSMEGVQVCGASPGPMEQKFPIKPEPDFQSNPGFTFGSFHDTGLPLNHGQQIQQQQQQRNIENLEQTQQNDLPLLVGKLLGGYNSSTPNHSPVLNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSALGAASPVPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHPQHHQHQVAQGSPLHLPATASPAITHHYASSAPGSELSPEGHAATDDQEDCRIPSAPSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPASLVGSPASNMSSDKLATGGNCSPAPVGNEHHYSARHHSNHSHKMQVVPQLLQDIMDVEHLWHYNDNDRMTLIQNAATNPTRNNDSMLLSVRSNGGSGIENDTGSGIECSSNGTAGSSNPSNRRDNRSCSNVSNVGNEQHAAPVGNSSQVNNTNGNPTQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQARQLGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00733987;
- 90% Identity
- iTF_00228733;
- 80% Identity
- iTF_00233255;