Bvan000978.1
Basic Information
- Insect
- Bombus vancouverensis
- Gene Symbol
- Hr39
- Assembly
- GCA_011952275.1
- Location
- NW:2238529-2269719[-]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 4 1.1e+04 -5.8 5.7 124 151 42 69 22 100 0.47 2 5 0.61 1.6e+03 -2.6 4.4 55 163 291 398 278 411 0.57 3 5 4 1.1e+04 -11.3 18.9 37 160 384 523 364 540 0.56 4 5 2.1e-07 0.00057 18.7 0.1 1 19 606 624 606 629 0.95 5 5 6.4e-71 1.7e-67 227.9 0.2 183 408 763 983 635 983 0.76
Sequence Information
- Coding Sequence
- ATGTCGGAGCAAAACGGGCCCGGCGAGGGCCCTGGACCGGGCCCAGGGCCGGGTCCTGGTTGGTGGCCAACCTCACAGTCCTGGAAGACAAACTCCTGCACCGCTGCCTCCTCGTCCACTTGTTCAACCGTTCCAGACAACTCCGCCTCCGTCTCTGCCTCTTGCACCACCTCTACGTCCTCCCTGGCGACCACCACATCGGCCACTTCGTCGACCAGCTGCTGTTCCTCCACTCCTGGCGGTGGACCGTCTTGCACGATCACCGCGGCCCGCTCCTCCGAAACGGGAAAGAACGTCTCTGTCACGACGATCAATGTACCCCCTAATCAGGACATGCACGATGGCAAGGGTATATGCAAGTATCTTGGCGGGCAGAATGGCGTGACGGTATCGGTGGTGTCGAGCTGTGGCTCCATACTGGGATGTGGAAACGCGAACGTTGTGTCTACCACGGGGATAGGCAGTAGCACCGGCACACAGAGTATCGGCATCGGAGTGAACATCCTTGACCAGAGCACGGCGGATGATGACGCGGAGGATAGCGACGTTGAGATAAGCAAAATCGACTTCCGAGGGGTGAATTTGCGTACgaagaagaagcgagacgtgTCTGGTAGTCAGAGTCAAAGCGGGGAGAAAATCGGCGATGAAGAGGTCGAGGATGGAAACGGTTGTTACGATGGAAGCGACGCGTCTCAGCAACAACCGGAGAGGCCCATGTCGTGGGAGGGAGAACTATCCGATCAAGAAATGTCTTCCAATACGATTACAAATCAAGATACACACGAGGACACGTCGATGGAGGGTGTTCAAGTATGTGGCGCGAGTCCCGGGCCAATGGAACAAAAATTTCCCATAAAACCAGAGCCAGATTTTCAGTCCAACCCAGGCTTCACGTTTGGCTCTTTTCACGACACCGGATTACCTCTGAATCACGGCCAGCAAAtacaacaacagcaacaacagcgCAACATTGAGAATCTTGAACAGACACAACAAAACGATTTGCCTCTTCTCGTAGGAAAATTACTTGGTGGTTACAATAGTTCGACACCGAATCACAGTCCAGTGTTGAATCCTAGACACCATTTAACAAAGCATAGCCACACGAGATCGCAGGTGCCGTCACCGGACTCGGCCATTCATTCCGCATACAGCGTATTCAGCTCCCCGACGCAAAGTCCTCACGCAGCTCGCCACTCCCCCCTGGGCGCGGCAAGTCCAGTTCCATCTTCGTCGCTATCCTTGTCGCGACACAGTTTCAACAATTCCACTTCCTCGTTGTCGCTCTCGTTGTCACACTCCCTCTCGAGAAACAATTCGGACGCCTCGAGCAGCTGCTACAGCTACGGCTCTCTCAGCCCACCCACACACTCGCCCGTCCAGCAACCGAGACATCCGCAACATCACCAGCATCAAGTTGCTCAAGGAAGCCCGCTTCATCTGCCAGCAACCGCTTCTTCCGCCATTACTCATCACTACGCTTCCTCTGCACCGGGTTCCGAGCTATCTCCAGAAGGACACGTTGCTACAGACGATCAGGAAGACTGTAGAATACCCTCGGCACCGTCTGGTATATCCACGAGGCAGCAACTAATTAATACCCCGTGCCCAATTTGCGGGGATAAGATCAGTGGTTTTCATTATGGAATATTCTCGTGCGAGTCGTGCAAGGGATTTTTCAAACGCACCGTCCAGAATCGAAAGAATTATGTGTGCCTTAGAGGCGCGGGCTGTCCAGTCACCGTTGTTACCAGGAAAAAATGCCCCGCCTGCAGATTCGAGAAGTGCCTCAGTATGGGTATGAAGCTCGAGGCGATTAGGGAGGATCGCACCAGGGGTGGCAGAAGCACCTATCAATGTACATATACCTTTCCACCAAATTTTGTCGGTAGTCCTGCAAGTAACATGTCCAGCGACAAATTAGCTACCGGAGGAAATTGTAGTCCAGCTCCAGCTGGTAACGAACATCACTATCCGGCAAGGCACCATTCGAATCACTCCCATAAGATGCAAGTGGTACCGCAACTTCTACAGGATATCATGGACGTAGAGCACTTGTGGCATTACAATGATAACGATCGTATGACTGGGATTCAAAACGCAGGAACGAATCTTACTAGAAACAACGATTCGATGTTATTGAGTGTTAGAAGCAACGGAGGATCTGGAATAGAGAACGACACGGGTTCAGGTATTGAGTGTTCCTCCAATAGAACTACAGGAAATGGTAATGCTAGTAATAGAAGAGACAACAGATCATGCTCCAATGTTTCTAATGTTGGTAACGAACAACACGCTGCATCCGTTGGTAACAGTTCTCAAATCAACAATACGAATTGCAATCCAACTCAACATCCTGATTTTCTGTCGAACCTCTGCAATATCGCTGATCATCGACTCTACAAAATAGTGAAGTGGTGCAAGAGTTTGCCGTTGTTTAAAAACATTTCGATCGATGATCAGATCTGTCTGTTGATTAATTCTTGGTGCGAGCTACTGCTCTTCTCATGCTGCTTTCGCAGTATGAGCACTCCCGGTGAAATTAGAGTGTCTCTCGGTAAGTCGATTACACTGGAACAAGCTAGGCAGCTTGGCTTAGCGACCTGCATCGAGAGGATGCTTGCATTTACTAACAATTTGAGAAGGCTCCGAGTAGATCAGTACGAATACGTGGCGATGAAGgtAATAGTACTATTGACCTCTGATACGAGTGAACTGAAAGAACCTGAAAAAGTTAGAGCATCTCAAGAAAAGGCTTTACAAGCATTGCAACAATATACAATCGCAAGGTACCCAGAAATGCCTGCTAAGTTTGGTGAATTATTATTGAGAATTCCAGATTTACAAAGAACATGCCAAGCGGGAAAGGAATTATTAAGTGCTAAACGTGCTGAAGGAGAAGGCAGCTCGTTTAATCTGTTGATGGAATTGTTGAGAGGAGATCACTGA
- Protein Sequence
- MSEQNGPGEGPGPGPGPGPGWWPTSQSWKTNSCTAASSSTCSTVPDNSASVSASCTTSTSSLATTTSATSSTSCCSSTPGGGPSCTITAARSSETGKNVSVTTINVPPNQDMHDGKGICKYLGGQNGVTVSVVSSCGSILGCGNANVVSTTGIGSSTGTQSIGIGVNILDQSTADDDAEDSDVEISKIDFRGVNLRTKKKRDVSGSQSQSGEKIGDEEVEDGNGCYDGSDASQQQPERPMSWEGELSDQEMSSNTITNQDTHEDTSMEGVQVCGASPGPMEQKFPIKPEPDFQSNPGFTFGSFHDTGLPLNHGQQIQQQQQQRNIENLEQTQQNDLPLLVGKLLGGYNSSTPNHSPVLNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSPLGAASPVPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHPQHHQHQVAQGSPLHLPATASSAITHHYASSAPGSELSPEGHVATDDQEDCRIPSAPSGISTRQQLINTPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVVTRKKCPACRFEKCLSMGMKLEAIREDRTRGGRSTYQCTYTFPPNFVGSPASNMSSDKLATGGNCSPAPAGNEHHYPARHHSNHSHKMQVVPQLLQDIMDVEHLWHYNDNDRMTGIQNAGTNLTRNNDSMLLSVRSNGGSGIENDTGSGIECSSNRTTGNGNASNRRDNRSCSNVSNVGNEQHAASVGNSSQINNTNCNPTQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQARQLGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00733987;
- 90% Identity
- iTF_00228733;
- 80% Identity
- iTF_00232006;