Ccol006793.1
Basic Information
- Insect
- Colletes collaris
- Gene Symbol
- Hr39
- Assembly
- GCA_030068185.1
- Location
- JASGYR010000078.1:41663113-41667106[+]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 1.3 1e+04 -3.7 4.0 128 161 46 80 20 105 0.50 2 5 2.2 1.7e+04 -4.4 12.4 42 162 309 423 296 439 0.55 3 5 3.9 3.1e+04 -5.3 6.6 73 132 439 504 410 541 0.50 4 5 5.2e-08 0.00042 20.7 0.0 1 23 609 631 609 642 0.92 5 5 9e-71 7.1e-67 227.4 0.0 91 408 670 984 637 984 0.77
Sequence Information
- Coding Sequence
- ATGTCGGAGCAAAACGGGCCCAGCGAGGGCCCAGGACCGGGCCCGGGGCCAAGTCCTGGCTGGTGGCCGGCTTCGCAGTCTTGGAAAACAAACTCCGGCGCGGCTATTTGTTCGTCCAGCGGTTCCGCTGCTCCAGACAACTCCACCTCCGTCTCTGCATCCTGCACCACCTCTACCTCCTCTTTGGCAACTACTACTTCGGCCACTGCCTCGTCGAGCTGCTGTTCCTCGACTCCTAGCGGACACTCGTGTACGATCACCGCGGCTCGTTCCACGGAAACGGGAAAGAACGTTTCCGTCACTACGATTAATGTGCCGCCCAATCAGGACATACACGACGGCAAGGGTATCTGCAAGTATCTTGCCGGGCAAAACGGCGTGACGGTGTCCGTAGTTTCGAGCTGTGGTTCCGTGCTGGACTGCGGGAACACGAACGTTGTGTCGACGACAGGAATCGGCACCAGCACCGGCTCGCACAGCATCGGCATCGGGATTGGGGTCGGTGTCTTGGCCCAAAAGACAGAGAACGACGCCGAAGATAGCGATGGCGAGATAAGCAAGATCGATTTCCGGGGGGTGAATTTACGCACGAAAAAAAAGCGCGACGTGTTGGGCAGCGGCGAGAAAATCGGCGACGGCGACGTTGAAGATGGAAATGGTTGTTACGACGGAAACGATACGTCTCACCAACAGCCAGAGAGACCGATGTCGTGGGAAGGAGAACTTTCCGACCAGGAAATGTCTTCCAACACGATCACGAACCAAGACATGCACGAGGAGACGTCGATGGAAGGTGTCCAAGTATGCGGCGCGAGTCCCAGTCCTGTGGAGCAGAAGTTTCTCATTAAACCGGAGCCAGACTTCGGGTCCAGTCCGGGATTCGGGCTAGGTTCCTTCCACGATACAGGGTTATCTCTGGCCCACGGTCAGCAGatgcaacagcaacagcagcaacagcaacagcaacaacaacaacggaACATCGAGAGCCTCGAACAGACACAACAAAGCGATTTGCCTCTTCTCGTGGGGAACCTACTTGGTGGCTACAACAGCTCAACCCCAAATCATAGTCCTGTGTTAAATCCGAGGCACCATTTGACCAAGCATAGCCACACGAGATCGCAGGTGCCGTCTCCTGATTCCGCAATTCACTCTGCGTATAGCGTGTTTAGCTCGCCAACGCAGAGTCCCCATGCAGCTCGACACTCTGCTCTAGGAGCAGGAAGTCCAGTCCCGTCTTCGTCGCTTTCTCTCTCCCGTCACAGCTTCAACAACTCGACCTCGTCGTTATCGTTGTCGCTATCGCATTCGCTCTCGAGAAACAATTCAGACGCCTCGAGCAGCTGTTACAGCTACGGTTCTCTTAGTCCACCCACGCATTCACCCGTCCAGCAGCCAAGACATCCGCAGCATCATCAGCACCAAGTAGCCCAAGGAAGTCCGCTTCATCTACCAGCAACGGCCTCCGTTGCCGTTGCGCATCACTATTCTCCTTCCGCGCCTGGTTCCGAGCTCTCCCCCGAAGGACATGCTACTGCAGACGATCAGGAAGACTGTCGAATACCCTCGGCACCTTCTGGTATTTCCACCAGACAGCAGCTGATCAATAGTCCCTGTCCAATTTGCGGAGACAAGATCAGCGGTTTCCATTACGGAATTTTCTCTTGCGAGTCTTGCAAAGGATTCTTTAAACGCACCGTCCAGAATCGGAAGAATTATGTGTGCCTTAGAGGCGCGGGCTGTCCGGTCACTGTCGCCACCAGGAAGAAGTGCCCAGCCTGCCGTTTCGACAAGTGCCTCAACATGGGTATGAAGCTGGAGGCGATTAGGGAGGATCGTACCAGAGGTGGAAGAAGTACCTATCAGTGTACCTACACTCTTCCAGCGAGCCTCGTTGGTAGTCCAGCGTGCAGTATGACTAGCGACAAGCTAGCTGCAAGTGGAAATTGCAGTCCAGCTCCAGCTGGTAGCGAGCATCATTACTCCATCAGGCATCACTCGAATCACTCGCACAAGATGCAAGTAGTGCCGCAACTTCTACAGGATATCATGGATGTGGAGCACTTGTGGCACTACAACGATAATGATCGTATGTCTGGGATAAAAACTGAAGGAACAAACGTTGCCAGAAGTAACGATGCTATGTTATTGGGCGTCGGGTCTGGGGCCGGAAACGACGGTGGGCCAGGTATCGAATGTTCCTCGAACGGTACCACAGGAAATGGAAATCTCAGCAATACTCGGAGAGATAACAGGCCGTGCTCCACTATTCCTGGCGTCACCAACGAACAACGCAGTGCGCCTGTCAACAGCAGTCCCCAAATGACTAATAATACAAATGGCAATCCGACCCAACATCCTGATTTTCTTTCAAATCTCTGCAACATTGCTGATCATCGGCTCTACAAAATAGTCAAGTGGTGCAAGAGTTTACCGTTGTTCAAAAATATATCGATCGACGATCAAATATGTCTACTGATTAATTCCTGGTGCGAGTTACTGCTCTTCTCGTGTTGTTTTCGTAGCATGAGCACTCCCGGTGAAATTAGAGTATCTCTCGGCAAGTCGATTACTTTGGAACAGGCTAGACAACTTGGCTTAGCGACATGCATCGAGAGAATGCTCGCATTTACTAACAATCTGAGAAGGCTCAGAGTCGATCAGTATGAATACGTAGCAATGAAGGTAATAGTGCTGTTGACCTCGGACACGAGTGAACTAAAGGAACCTGAAAAGGTTAGAGCCTCCCAGGAAAAGGCTTTACAAGCATTGCAACAGTACACCATAGCGAGGTACCCGGAAATGCCTGCTAAGTTCGGCGAACTGCTATTGAGAATTCCAGATTTGCAAAGAACATGCCAGGCGGGAAAAGAATTATTAAGTGCAAAACGTGCTGAAGGAGAAGGCAGCTcatttaatttgttaatggaaCTGTTGAGAGGAGATCACTGA
- Protein Sequence
- MSEQNGPSEGPGPGPGPSPGWWPASQSWKTNSGAAICSSSGSAAPDNSTSVSASCTTSTSSLATTTSATASSSCCSSTPSGHSCTITAARSTETGKNVSVTTINVPPNQDIHDGKGICKYLAGQNGVTVSVVSSCGSVLDCGNTNVVSTTGIGTSTGSHSIGIGIGVGVLAQKTENDAEDSDGEISKIDFRGVNLRTKKKRDVLGSGEKIGDGDVEDGNGCYDGNDTSHQQPERPMSWEGELSDQEMSSNTITNQDMHEETSMEGVQVCGASPSPVEQKFLIKPEPDFGSSPGFGLGSFHDTGLSLAHGQQMQQQQQQQQQQQQQRNIESLEQTQQSDLPLLVGNLLGGYNSSTPNHSPVLNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSALGAGSPVPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHPQHHQHQVAQGSPLHLPATASVAVAHHYSPSAPGSELSPEGHATADDQEDCRIPSAPSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPASLVGSPACSMTSDKLAASGNCSPAPAGSEHHYSIRHHSNHSHKMQVVPQLLQDIMDVEHLWHYNDNDRMSGIKTEGTNVARSNDAMLLGVGSGAGNDGGPGIECSSNGTTGNGNLSNTRRDNRPCSTIPGVTNEQRSAPVNSSPQMTNNTNGNPTQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQARQLGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00733987;
- 90% Identity
- iTF_00763268;
- 80% Identity
- iTF_00360272;