Bhor012087.1
Basic Information
- Insect
- Bombus hortorum
- Gene Symbol
- Hr39
- Assembly
- GCA_905332935.1
- Location
- HG995192.1:217630-228028[+]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 3 2.2e+04 -6.9 6.2 122 140 51 69 23 103 0.48 2 5 2.1 1.5e+04 -4.8 7.9 79 163 316 398 251 433 0.55 3 5 3 2.2e+04 -12.0 18.3 44 146 393 509 364 539 0.53 4 5 1.6e-07 0.0012 18.7 0.1 1 19 606 624 606 629 0.95 5 5 2.8e-71 2e-67 228.7 0.2 89 408 665 983 632 983 0.75
Sequence Information
- Coding Sequence
- ATGTCGGAGCAAAACGGGCCCAGCGAGGGCCCTGGACCGGGCCCAGGGCCGGGTCCTGGTTGGTGGCCAACCTCACAGTCCTGGAAAACGAACTCCTGCACCGCTGCCTCCCCGTCCGCTTGTTCAACCATTTCAGACAACTCCGCCTCCGTCTCTGCCTCTTGCACCACCTCTACGTCCTCCCTGGCGACCACCACATCGGCCACTTCATCGACCAGCTGCTGTTCCTCCACCCCTGGCGGTGGACCGTCTTGCACGATCACCGCGGCCCGCTCCTCCGAAACGGGAAAGAACGTCTCTGTCACGACGATCAATGTACCCCCTAATCAGGACATGCACGATGGCAAGGGTATATGCAAGTATCTTGGCGGCCAGAACGGCGTGACAGTATCGGTGGTGTCAAGCTGTGGCTCCGTACTGGGATGTGGAAACGCGAACGTCGTGTCTACCACGGGGATAGGCAGTAGCACCGGCACACAGAGTATTGGCATCGGAGTGAACATCCTTGACCAGAGCACGGCCGATGATGACGCGGACGATAGCGACGTTGAGATAAGCAAAATCGACTTCCGAGGGGTGAATTTGCGTACGAAGAAGAAACGAGACGTGTCTGGTAGCCAGAGTCAAAGCGGGGAGAAAATCGGCGATGGAGAGGTCGAGGATGGGAACGGTTGTTACGATGGAAGCGACGCGTCTCAGCAACAACCGGAGAGGCCCATGTCGTGGGAGGGAGAACTATCCGATCAAGAAATGTCTTCCAATACGATTACAAATCAAGATACACACGAGGACACGTCAATGGAGGGTGTTCAAGTATGCGGCACCAGTCCCGGGCCAATGGAACAAAAATTTCCCATAAAGCCAGAGCCAGATTTTCAGTCCAACTCAGGTTTCACGTTTGGCTCTTTTCACGACGCCGGATTACCTCTGAGTCACGGCCAGCAGATACAACAACAGCAACAACAGCGCAACATTGAGAACCTCGAACAGACACAACAAAACGATTTGCCTCTACTCGTAGGAAAATTACTCGGCGGTTACAATAGTTCGACTCCGAATCACAGTCCAGTGTTGAATCCTAGACACCATCTAACAAAACATAGCCACACGAGATCGCAGGTGCCGTCACCGGACTCGGCCATTCATTCCGCGTACAGCGTATTCAGCTCCCCGACGCAAAGTCCTCACGCGACTCGCCACTCCCCCCTGGGCGCGGCAAGTCCAGTTCCGTCTTCGTCGCTATCATTGTCGCGACACAGTTTCAACAATTCCACTTCCTCGTTGTCGCTCTCGTTGTCACACTCCCTCTCGAGAAACAATTCGGACGCCTCGAGCAGCTGCTACAGCTACGGCTCTCTCAGCCCACCCACGCACTCGCCCGTCCAGCAACCGAGACATCCGCAGCATCACCAGCATCAAGTTGCTCAAGGAAGCCCGCTTCATCTGCCAGCAACCGCTTCTCCCGCCATTACTCATCACTACGCTTCCTCCGCACCGGGTTCCGAGCTATCTCCAGAAGGACACGCCGCTACAGACGATCAGGAAGACTGTAGAATACCCTCGGCACCGTCCGGTATATCCACAAGGCAGCAACTAATTAATACCCCGTGTCCAATTTGCGGGGATAAGATCAGCGGCTTTCATTATGGAATATTCTCGTGCGAGTCGTGCAAGGGATTTTTCAAACGCACCGTCCAGAATCGAAAGAATTACGTGTGCCTTAGAGGCGCGGGCTGTCCAGTCACCGTTGTTACCAGGAAAAAATGCCCCGCCTGCAGATTCGAGAAGTGCCTCAATATGGGTATGAAGCTGGAGGCGATCAGGGAGGATCGCACCAGAGGTGGCAGAAGTACCTATCAGTGTACATATACTTTTCCGCCAAATTTTGTCGGTAGTCCTGCGAGTAACATGTCCAGCGACAAATTAGCTACCGGAGGAAATTGTAGTCCAGCTCCAGCTGGTAACGAACATCACTATCCGGCAAGGCACCATTCGAATCACTCGCACAAGATGCAAGTGGTACCGCAACTTCTACAGGATATCATGGACGTAGAACACTTGTGGCATTACAATGACAACGATCGTATGACTGGGATTCAAAACGCAGGAACGAATTTCGCTAGAAACAACGATTCAATGTTGTCGAGTGTTAGAAGCAACGGAGGATCTGGAATAGAGAACGACGCGGGTTCAGGTATCGAGTGTTCCTCCAACAGAACTACGGGAAATGGTAATCCTAGTAATAGAAGAGATAACAGATCGTGCTCCAATGTTTCCAACGTTGGTAACGAACAACACGCTGCACCCGTTGCTAACAGTTCTCAAATCAACAATACGAATTGCAATCCAACTCAACATCCTGATTTTCTGTCGAACCTCTGCAATATCGCTGATCATCGACTCTACAAAATAGTGAAGTGGTGCAAGAGTTTGCCGTTATTTAAAAACATTTCGATCGATGATCAGATCTGTCTGTTGATTAATTCTTGGTGCGAGCTACTGCTCTTCTCGTGCTGCTTTCGCAGCATGAGCACTCCCGGTGAAATTAGAGTGTCTCTCGGTAAGTCGATTACACTGGAACAAGCTAGGCAGCTTGGCTTAGCGACCTGCATCGAGAGGATGCTTGCATTTACTAACAATTTGAGAAGGCTCCGAGTAGATCAGTACGAATACGTGGCGATGAAGGTAATAGTACTGTTGACCTCTGATACAAGCGAACTGAAAGAACCTGAAAAAGTTAGAGCATCTCAGGAAAAGGCTTTACAAGCGTTGCAACAATATACTATCGCAAGGTACCCAGAAATGCCTGCTAAGTTTGGTGAATTATTATTGAGAATTCCAGATTTACAAAGAACATGCCAAGCAGGAAAGGAATTGCTAAGTGCTAAACGCGCTGAAGGAGAAGGCAGCTCGTTTAATCTGTTGATGGAATTGTTGAGAGGAGATCACTGA
- Protein Sequence
- MSEQNGPSEGPGPGPGPGPGWWPTSQSWKTNSCTAASPSACSTISDNSASVSASCTTSTSSLATTTSATSSTSCCSSTPGGGPSCTITAARSSETGKNVSVTTINVPPNQDMHDGKGICKYLGGQNGVTVSVVSSCGSVLGCGNANVVSTTGIGSSTGTQSIGIGVNILDQSTADDDADDSDVEISKIDFRGVNLRTKKKRDVSGSQSQSGEKIGDGEVEDGNGCYDGSDASQQQPERPMSWEGELSDQEMSSNTITNQDTHEDTSMEGVQVCGTSPGPMEQKFPIKPEPDFQSNSGFTFGSFHDAGLPLSHGQQIQQQQQQRNIENLEQTQQNDLPLLVGKLLGGYNSSTPNHSPVLNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHATRHSPLGAASPVPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHPQHHQHQVAQGSPLHLPATASPAITHHYASSAPGSELSPEGHAATDDQEDCRIPSAPSGISTRQQLINTPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVVTRKKCPACRFEKCLNMGMKLEAIREDRTRGGRSTYQCTYTFPPNFVGSPASNMSSDKLATGGNCSPAPAGNEHHYPARHHSNHSHKMQVVPQLLQDIMDVEHLWHYNDNDRMTGIQNAGTNFARNNDSMLSSVRSNGGSGIENDAGSGIECSSNRTTGNGNPSNRRDNRSCSNVSNVGNEQHAAPVANSSQINNTNCNPTQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQARQLGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00733987;
- 90% Identity
- iTF_00228733;
- 80% Identity
- iTF_00220617;