Bsor013816.1
Basic Information
- Insect
- Bombus soroeensis
- Gene Symbol
- Hr39
- Assembly
- GCA_014737365.1
- Location
- JACXIL010000225.1:1000223-1031232[-]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 1.8 1.1e+04 -4.5 4.3 80 157 41 67 22 99 0.50 2 5 2.3 1.5e+04 -4.9 9.3 56 160 313 421 291 443 0.53 3 5 3 1.9e+04 -9.9 15.5 60 160 409 524 371 541 0.51 4 5 1.6e-07 0.001 18.6 0.1 1 19 607 625 607 630 0.95 5 5 9.1e-71 5.8e-67 227.0 0.1 185 408 766 984 627 984 0.82
Sequence Information
- Coding Sequence
- ATGTCGGAGCAAAACGGGCCCAGCGAGGGCCCTGGACCGGGCCCTGGGCCGGGTCCTGGTTGGTGGCCAAGCTCACAGTCCTGGAAGACGAACTCCTGCACCGTTGCCTCCTCGTCCACTGGTTCAACCGTTACAGACAACTCCGCCTCCGTCTCTGCCTCTTGCACCACCTCTACGTCCTCCCTGGCGACCACCACATCGGCCACTTCATCGACCAGCTGCTGTTCCTCCAGCCATGGCGGTGGACCGTCTTGCACGATCACCGCGGCCCGCTCCTCCGAAACGGGAAAGAACGTGTCCGTCACGACGATCAACGTACCCCCTAATCAGGACATGCACGATGGCAAGGGTATATGCAAGTATCTTGGCGGCCAGAATGGCGTGACAGTATCGGTAGTGTCAAGCTGTGGCTCCATACTGGGATGTGGAAACGCGAATGTTGTGTCTACCACGGGGATAGGCAGCAGCACCGGCACGCACAGTATTGGCATCGGAGTGAACATCGTTGACCAGAGCACGGCGGACGATGACGCGGAGGATAGCGACGTTGAGATAAGCAAAATCGACTTCCGAGGGGTGAATTTGCGTACGAAGAAGAAACGAGACGTGTCCGGTGGTAGTCTGAGTCAAAGCGGGGAGAAGATCGGCGATGCAGAGGTCGAGGATGGGAACGGTTGTTACGATGGAAGCGATGCGTCTCAGCAACAGCCGGAGAGGCCCATGTCATGGGAGGGAGAACTATCCGATCAAGAAATGTCTTCCAATACGATTACGGATCAAGATACGCACGAGGACACGTCGATGGAGGGTGTTCAAGTATGTGGCGCGAGTCCCGGGCCAATGGAAGAAAAATTTCCCATAAAACCAGAGCCAGATTTTCAGTCCAACCCAGGTTTCACGTTCGGCTCTTTTCACGACACCGCGTTACCTCTGAATCACGGCCAGCAGATACAACAACAGCAACAACAGCACAACATCGAGAATCTTGAACAGACGCAACAAAACGATTTGCCCCTTCTCGTAGGAAAATTGCTCGGTGGTTACAATAGTTCGACTCCGAATCACAGTCCAGTGTTGAATCCTAGACACCATCTGACAAAGCATAGCCACGCGAGATCGCAGGTGCCGTCACCGGACTCGGCCATTCATTCCGCATACAGCGTATTCAGCTCCCCGACGCAAAGTCCTCACGCAGCTCGCCACTCCCCCCTGGGCGCGGCAAGTCCAGTTCCATCTTCGTCGCTATCCTTGTCGCGACACAGTTTCAACAATTCCACTTCCTCGTTATCGCTCTCGTTGTCACACTCCCTCTCGAGAAACAATTCGGACGCCTCGAGCAGCTGCTACAGCTACGGCTCTCTCAGCCCACCCACACACTCGCCCGTCCAGCAACCGAGACATCCGCAGCATCACCAGCATCAAGTCGCTCAGGGAAGTCCACTTCATCTGCCAGCGACCGCTTCTCCCGCCATTACTCATCACTACACCTGCTCTGCACCGGGTTCTGAGCTATCTCCAGAAGGACACGCTGCTACGGACGATCAGGAAGACTGTAGAGTAACCTCGGCACCGTCTGGTATATCCACGAGGCAGCAACTAATTAATACCCCGTGTCCAATTTGCGGGGATAAGATCAGTGGTTTTCATTATGGAATATTCTCGTGCGAGTCGTGCAAGGGATTTTTCAAACGCACCGTCCAGAATCGAAAGAATTATGTGTGCCTTAGAGGCGCGGGCTGTCCAGTCACCGTTGTTACCAGGAAAAAATGCCCCGCCTGCAGATTCGAGAAGTGCCTCAGTATGGGTATGAAGCTCGAGGCGATTAGGGAGGATCGCACCAGGGGTGGCAGAAGTACCTATCAGTGTACATATACTTTTCCACCAAATTTTGTCGGTAGTTCTGCAAGTAACATGTCCAGCGACAAATTAGCTGCCGGAGGAAATTGTAGTCCAGCTCCAGCTGGTAACGAACATCACTATCCGGCGAGGCACCATTCCAATCACTCCCATAAGATGCAAGTGGTGCCGCAACTTCTACAGGATATCATGAACGTGGAGCACTTGTGGCATTACAATGATAACGATCGTATGACTGGGATTCAAAACGCAGGAACGAACGCTACTAGAAACAACGATTCGATGTTATTGAGCGTTAGAAGGAACGGAGGATCTGGAATAGAGAACGACGCAGGTTCGGGTATCGAGTGTTCCTCCAATGGAACTACGGGAAATGGTAATCCCAGCGATAGAAGAGATAACAGATCATGCTCCAATGTTTCTAACGTTGGTAACGAACAACACGCTGCACCCGTTGCCAACAGTTCTCAAATCAACAATACGAATGGTAATCCAACTCAGCATCCCGATTTTCTGTCAAACCTCTGCAATATCGCTGATCATCGACTCTACAAAATAGTGAAGTGGTGCAAGAGTTTGCCGTTATTTAAAAACATTTCGATCGATGATCAGATCTGTCTGTTGATTAATTCTTGGTGCGAGCTACTGCTCTTCTCGTGCTGCTTTCGCAGTATGAGCACTCCCGGTGAAATTAGAGTGTCTCTCGGTAAGTCGATTACACTGGAACAAGCTAGGCAGCTTGGCTTAGCGACCTGCATCGAGAGGATGCTTGCATTTACTAACAATTTGAGAAGGCTCCGAGTAGATCAGTACGAATACGTGGCGATGAAGGTGATAGTACTGTTGACCTCTGATACGAGTGAACTGAAAGAACCTGAAAAAGTTAGAGCATCTCAGGAAAAGGCTTTACAAGCATTGCAACAATATACTATCGCAAGGTATCCAGAAATGCCTGCCAAGTTTGGTGAATTATTATTGAGAATTCCAGATTTACAAAGAACGTGCCAAGCTGGAAAGGAATTATTAAGTGCTAAACGTGCTGAAGGAGAAGGCAGCTCGTTTAATCTGTTGATGGAATTGTTGAGAGGGGATCACTGA
- Protein Sequence
- MSEQNGPSEGPGPGPGPGPGWWPSSQSWKTNSCTVASSSTGSTVTDNSASVSASCTTSTSSLATTTSATSSTSCCSSSHGGGPSCTITAARSSETGKNVSVTTINVPPNQDMHDGKGICKYLGGQNGVTVSVVSSCGSILGCGNANVVSTTGIGSSTGTHSIGIGVNIVDQSTADDDAEDSDVEISKIDFRGVNLRTKKKRDVSGGSLSQSGEKIGDAEVEDGNGCYDGSDASQQQPERPMSWEGELSDQEMSSNTITDQDTHEDTSMEGVQVCGASPGPMEEKFPIKPEPDFQSNPGFTFGSFHDTALPLNHGQQIQQQQQQHNIENLEQTQQNDLPLLVGKLLGGYNSSTPNHSPVLNPRHHLTKHSHARSQVPSPDSAIHSAYSVFSSPTQSPHAARHSPLGAASPVPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHPQHHQHQVAQGSPLHLPATASPAITHHYTCSAPGSELSPEGHAATDDQEDCRVTSAPSGISTRQQLINTPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVVTRKKCPACRFEKCLSMGMKLEAIREDRTRGGRSTYQCTYTFPPNFVGSSASNMSSDKLAAGGNCSPAPAGNEHHYPARHHSNHSHKMQVVPQLLQDIMNVEHLWHYNDNDRMTGIQNAGTNATRNNDSMLLSVRRNGGSGIENDAGSGIECSSNGTTGNGNPSDRRDNRSCSNVSNVGNEQHAAPVANSSQINNTNGNPTQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQARQLGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00733987;
- 90% Identity
- iTF_00228733;
- 80% Identity
- iTF_00229410;