Obic003726.1
Basic Information
- Insect
- Osmia bicornis
- Gene Symbol
- Hr39
- Assembly
- GCA_907164935.1
- Location
- NC:7588027-7609076[-]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.43 1e+03 -0.8 5.3 107 161 25 83 14 108 0.62 2 5 2.9 7.1e+03 -3.5 5.8 69 163 308 401 248 420 0.60 3 5 10 2.4e+04 -7.0 11.5 70 160 436 526 408 543 0.51 4 5 8.5e-08 0.00021 21.3 0.0 1 24 609 632 609 641 0.89 5 5 1.2e-71 3e-68 231.6 0.0 65 408 636 982 629 982 0.76
Sequence Information
- Coding Sequence
- ATGTCGGAGCAAAACGGGCCCAGCGAGGGCCCAGGACCAGGTCCGGGTCCGGGACCGGGACCCGGTTGGTGGCCAGCCTCGCAATCCTGGAAGACGAACTCCTGTACGTCCGTCTCCTCCTCGTCGACTACTTCCACTGCTCCAGACAGCTCCGCCTCCGTCTCTGTCTCCTGCACCATTTCTACCTCTTCCCTGACCACCACCACTTCCACATCTTCCTCGACCAGCTGCTGTTCCTCGACTCCTAGCGGACCCTCGTGCACGATCACTGCTGCTCGTTCCTCGGAAACAGGGAAAAACGTTTCCGTCACGACTATCAACGTACCGAATAATCAGGACATACATGATGGCAAAGGTATCTGCAAGTACCTTACCGGCCAGAATGGCGTCACAGTGTCGGTAGTTTCGAGCTGTGGCTCCGTGTTGGACTGTGGAAATGCAAACGTTGTATCCACCACAGGGATCGGCATCAGCAGCGGGTCGCACAGCATCGGTATCGGTATAGGTGTCAATGTCCTTCAGTCTCAGAACACCGGGGACGATGATGCGGAAGATAGCGATGTCGAAATAAGCAAGATTGATTTTCGCGGGGTGAACCTGCGtacgaagaagaaacgagaCGTGCCGGTGAACCAAGCAGGAGAGAAAATAGGCGACGTAGACGCCGAAGATGGAAATTGCTGTTACGATGGAAACGATATCTCCCAACAGCAGCCAGAAAGACCCATGTCGTGGGAAGGTGAATTGTCTGACCAAGAAATGTCTTCCAATACAATTACAAATCAGGATACACACGAAGACACATCCATGGAAGGTGTCCAGGTATGCAGCGCAAGTCCAGGTCCTATGGAGCAAAAATTTCCTATAAAACCAGAGCCAGACTTCCGGTCTAGTCCGGGATTTGCATTTGGTTCATTTCACGATACTGGATTACCTTTGACCCATGGCCAGCAGatgcagcaacaacaacagcagcgCAACATAGAGAACCTTGAACAGACACAACAAAATGATTTACCTCTCCTCGTAGGGAAACTACTGGGTGGTTACAATAGTTCAACTCCAAATCACAGTCCTGTGTTGAATCCCAGACATCATTTGACTAAACATAGTCATACGAGATCGCAGGTGCCGTCTCCAGACTCGGCGATTCACTCTGCGTACAGCGTATTCAGTTCGCCGACGCAAAGCCCTCATGCAGCTCGTCACTCCGCTTTAGGAGCAGGAAGTCCAGTACCATCTTCGTCGCTTTCTCTGTCGCGACACAGTTTCAACAATTCAACATCCTCGTTATCGTTGTCGCTATCTCATTCTCTCTCGAGAAACAATTCGGATGCCTCGAGCAGCTGTTACAGCTACGGTTCTCTCAGTCCACCCACGCATTCACCCGTCCAACAACCAAGACATCCGCAGCATCATCAGCATCAGGTAGCTCAGGGAAGTCCGCTTCATCTGCCGGCAACAGCCCCGTCCGCGATTGCTCATCATTACTCTTCCTCTACACCGGGTTCTGAACTCTCACCTGAAGGGCATACCGCACCCGATGACCAAGAAGACTGTCGAATACCCTCAGCGCCTTCGAGTATCTCTACTAGGCAACAACTGATCAATAGCCCCTGTCCAATTTGTGGCGACAAGATAAGCGGTTTCCATTATGGAATCTTCTCCTGTGAATCGTGTAAAGGATTCTTCAAACGCACCGTCCAAAACCGAAAGAATTATGTGTGCCTTAGAGGCGCGGGCTGTCCAGTCACCGTCGCCACCAGAAAGAAGTGCCCGGCCTGCCGCTTTGACAAGTGCCTCAATATGGGTATGAAACTCGAGGCTATTAGAGAAGACCGCACCAGGGGCGGTCGAAGTACCTATCAGTGTACGTACACTCTTCCTGCGAGTCTCGTGAGCAATTCCGCGAGCGGCATGACCGGTGACAAATTGACCACGGGGGGTAATTGTAGTCCAGCTCCACCTGGTAGCGAGCATCATTATAGCAGCAGGCATCACTCGCATAAGATGCAGATGGTGCCGCAACTTTTGCAAGACATTATGGACGTAGAACATTTGTGGCATTACAACGATAACGATCGAATGTCTGGAATTCAAGCTGGAGGAACGAACGCTACTAGAAACAACGATGCGATGTTATTGGGAGTTGGAACTGGTGGTGGATCTGGTACGGGAAGTGATGCAGGTTCGAGAGTTGAACGTTCCACCAATGGAACAGCTGGAAATGGAAATTCCAACAATAGAAGAGACGATAGGCCTAACGTTTCTAATGTTAACAGTGAACAACGAGCTACATCCGTTAACAGTAGTTCCCAGATCGGTAATAACACGAATGGCAACTCTACCCAACATCCTGATTTCCTGTCGAACCTCTGCAACATTGCTGATCATCGATTGTACAAAATAGTGAAATGGTGCAAGAGTCTGCCgctgtttaaaaatatatccaTCGACGATCAAATCTGTCTGTTAATTAACTCTTGGTGCGAGCTATTGCTCTTCTCGTGCTGCTTTCGCAGTATGAGTACTCCCGGTGAAATCAGAGTGTCTCTGGGCAAGTCGATCACATTAGAACAGGCTAGACAGCTTGGCTTGGCGACCTGCATCGAGAGGATGCTCGCATTTACTAACAATCTGAGAAGGCTAAGAGTCGATCAGTACGAATATGTAGCAATGAAGGTAATAGTGTTGTTGACCAGTGATACGAGTGAACTAAAGGAACCTGAAAAAGTTCGAGCGTCTCAGGAAAAGGCTTTACAGGCACTGCAGCAATACACCATAGCAAGGTACCCAGAGATGCCTGCCAAGTTTGGCGAATTATTGTTAAGAATTCCAGATTTACAAAGAACATGCCAGGCAGGAAAAGAATTGTTAACTGCAAAACGCGCAGAAGGAGAGGGCAGCTCGTTTAATTTGTTGATGGAATTATTAAGAGGAGATCACTGA
- Protein Sequence
- MSEQNGPSEGPGPGPGPGPGPGWWPASQSWKTNSCTSVSSSSTTSTAPDSSASVSVSCTISTSSLTTTTSTSSSTSCCSSTPSGPSCTITAARSSETGKNVSVTTINVPNNQDIHDGKGICKYLTGQNGVTVSVVSSCGSVLDCGNANVVSTTGIGISSGSHSIGIGIGVNVLQSQNTGDDDAEDSDVEISKIDFRGVNLRTKKKRDVPVNQAGEKIGDVDAEDGNCCYDGNDISQQQPERPMSWEGELSDQEMSSNTITNQDTHEDTSMEGVQVCSASPGPMEQKFPIKPEPDFRSSPGFAFGSFHDTGLPLTHGQQMQQQQQQRNIENLEQTQQNDLPLLVGKLLGGYNSSTPNHSPVLNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSALGAGSPVPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHPQHHQHQVAQGSPLHLPATAPSAIAHHYSSSTPGSELSPEGHTAPDDQEDCRIPSAPSSISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPASLVSNSASGMTGDKLTTGGNCSPAPPGSEHHYSSRHHSHKMQMVPQLLQDIMDVEHLWHYNDNDRMSGIQAGGTNATRNNDAMLLGVGTGGGSGTGSDAGSRVERSTNGTAGNGNSNNRRDDRPNVSNVNSEQRATSVNSSSQIGNNTNGNSTQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQARQLGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLTAKRAEGEGSSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00733987;
- 90% Identity
- iTF_01122467;
- 80% Identity
- iTF_01122467;