Xvio007495.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xylocopa violacea
Gene Symbol
Hr39
Assembly
GCA_963969225.1
Location
CAXAJV010000011.1:31147326-31151548[+]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 2.8 1.1e+04 -4.5 5.7 119 170 48 99 24 113 0.72
2 5 5 2e+04 -5.7 17.0 43 162 316 434 292 458 0.46
3 5 3.7 1.5e+04 -4.9 6.9 72 160 449 537 426 553 0.52
4 5 5.4e-08 0.00022 20.9 0.0 1 24 620 643 620 659 0.88
5 5 1.1e-69 4.5e-66 224.1 0.1 184 408 778 997 645 997 0.79

Sequence Information

Coding Sequence
ATGTCGGAGCAAAACGGACCCAGCGAGGGCCCAGGCCCTGGTCCCGGGCCGGGCCCTGGTTGGTGGCCAACCTCGCAATCCTGGAAGTCGAACTCGTGCACCGTCGCATCCTCGTCCGCCGGTTCCGCAGCTCCAGACAACTCCGCCTCCGTCTCTGCGTCCTGCACCACCTCTACCTCCTCACTGGCGACCACCACTTCGGTCGCATCCTCGACCAGCTGCTGTTCCTCGACCCCTGGCGGGCCGTCGTGCACGATCAGCACGGCTCGTTCGACCGAAACCGGAAAGAATGTCTCTGTCACGACAATCAACGTACCCCCCAATCAGGACGTCCACGATGGTAAAGGTATATGCAAGTATCTTGCCGGTCAGAATGGCGTGACGGTGTCCGTAGTCTCAAGTTGTGGCTCCGTGCTAGGCTGCGGGAACGGAAACGTCGTATCCACCACGGGAATCGGCACCAGCAACGGCTCGCAGAGCATAGGTATCGGGATCGGAGTGAACGTTCTGACGCAGAACACGGCGGATGACGATGCCGAGGACAGCGACGTCGAGATAAGTAAAATCGACTTTCGCGGAGTGAATCTGCGTACCAAGAAGAAACGGGACGCGTCGGGTAGTCAGAGCGGTGAGAAAATCGGCGACAGGGACGTCGAGGATGGAAACGGCTGTTACGATGGAAACGACGTATCCCAGCAGCAGCCAGAAAGACCTATGTCATGGGAAGGGGAACTGTCGGACCAAGAAATGTCTTCCAATACAATTACAAATCAGGATACGCACGAAGACACATCAATGGAGGGTGTCCAAGTATGTGGCGCGAGTCCTGGTCCCATGGAACAGAAATTTCCCATAAAACCAGAACCAGACTTCCGATCTAGCCCTGGATTTACGTTTAGTTCTTTTCACGACACAGGATTACCGCTAGCCCATAATCAACCGATtcaacagcagcaacagcaacaacaacagcaacaacaacaacaacaacaacagcagcagcaacaacgcAACATTGAAAATCTCGAACAGACACAACAGAACGACTTACCTCTTCTCGTAGGAAAATTACTTGGTGGTTACAATAGTTCGACTCCAAATCATAGTCCAGTGTTAAATCCAAGACATCATCTGACCAAGCATAGCCACACGAGATCGCAGGTACCGTCACCGGACTCGGCGATTCATTCTGCGTACAGCGTATTCAGTTCTCCAACGCAGAGCCCCCACGCAGCTCGTCATTCCGCCCTAGGAGCAGGAAGTCCAGTCCCATCTTCATCGTTATCCCTGTCGCGACATAGCTTCAACAACTCGACCTCCTCGTTGTCATTATCATTGTCACATTCGCTCTCGAGGAACAACTCGGACGCCTCGAGCAGCTGCTACAGTTACGGTTCCCTAAGTCCGCCCACGCATTCACCCGTCCAACAACCGAGACATCCCCAGCATCACCAACATCAGGTGGCTCAAGGAAGTCCGCTTCATCTAGCAGCAACAGCCTCGCCCGCCATCGCCCATCACTATGCCTCGTCCGCGCCTGGTTCCGAGCTTTCTCCCGAGGGACACGTCGCAGCGGACGATCAGGAAGATTGTCGAATACCGTCAGCCCCGTCCGGCATTTCCACTAGACAACAACTGATCAATAGCCCGTGTCCAATCTGCGGAGACAAGATCAGCGGTTTTCATTACGGAATCTTCTCGTGCGAATCGTGCAAGGGATTTTTTAAACGCACCGTCCAGAATCGGAAAAACTACGTGTGCCTTAGAGGCGCGGGCTGCCCGGTCACTGTCGCAACCAGGAAAAAGTGCCCCGCCTGCCGCTTTGACAAGTGCCTCAATATGGGAATGAAACTCGAGGCGATTAGAGAGGACCGTACCAGAGGTGGGAGAAGTACCTACCAATGTACGTACACGCTTCCGGCGAGCCTGGTCGGTAGCCCTGCGAGCAGCATGACCAGCGACAAGTTAGCCACAGGAGGAAATTGTAGTCCAGCTCCGGTCGGTAGCGAGTATCATTATACCGCTAGGCATTACTCTAATCACTCCCACAAGATGCAGGTGGTGCCGCAACTTTTGCAGGATATCATGGACGTAGAGCATTTGTGGCATTACAACGATAACGATCGTATGTCTGGGATTCAAGCTGGAGGAACGAACACTACCGCGAACAACGATACGATATTATTAGGAGTCGGAAGTGGCGGAGGAACCGGAACTGCAAACGACGCGAGTTCAGGTGTTGAATGTTCCTccaacgggaccacaggaaacgGTAATCCCAGTAACAGAAGAGACGACAGGTCATGCTCTAACGTATCTGCAATTAGTAACGAGCAACGAGCTGCGCCCATAAACAGCAATCCTCAAATGAACAATACAAACGGTAATCCGATTCAGCATCCAGACTTTCTGTCGAACCTCTGCAACATCGCTGACCATCGGCTCTACAAAATAGTGAAGTGGTGCAAGAGTTTGCCGTTATTCAAGAACATTTCAATCGACGATCAGATCTGTTTATTGATTAATTCTTGGTGCGAGCTACTGCTCTTCTCGTGCTGTTTTCGCAGTATGAGCACTCCCGGTGAAATTAGAGTGTCTCTCGGCAAGTCAATTACATTGGAACGAGCTAGACAGCTTGGCTTGGCGACTTGTATCGAGAGGATGCTCGCGTTCACTAACAATCTAAGAAGGCTTCGAGTAGATCAATATGAATACGTGGCGATGAAGGTAATAGTGTTGTTAACATCTGATACCAGTGAATTGAAGGAACCAGAAAAAGTTAGAGCGTCTCAGGAAAAGGCTTTACAAGCGTTGCAACAGTACACCATAGCGAGGTACCCAGAGATGCCTGCCAAATTTGGTGAATTATTATTGAGAATTCCAGATTTACAAAGAACATGTCAAGCGGGAAAAGAATTACTGAGTGCGAAACGCGCCGAAGGAGAAGGCAGCTCGTTTAATTTGTTGATGGAATTGTTGAGGGGAGATCATTGA
Protein Sequence
MSEQNGPSEGPGPGPGPGPGWWPTSQSWKSNSCTVASSSAGSAAPDNSASVSASCTTSTSSLATTTSVASSTSCCSSTPGGPSCTISTARSTETGKNVSVTTINVPPNQDVHDGKGICKYLAGQNGVTVSVVSSCGSVLGCGNGNVVSTTGIGTSNGSQSIGIGIGVNVLTQNTADDDAEDSDVEISKIDFRGVNLRTKKKRDASGSQSGEKIGDRDVEDGNGCYDGNDVSQQQPERPMSWEGELSDQEMSSNTITNQDTHEDTSMEGVQVCGASPGPMEQKFPIKPEPDFRSSPGFTFSSFHDTGLPLAHNQPIQQQQQQQQQQQQQQQQQQQQQRNIENLEQTQQNDLPLLVGKLLGGYNSSTPNHSPVLNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSALGAGSPVPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHPQHHQHQVAQGSPLHLAATASPAIAHHYASSAPGSELSPEGHVAADDQEDCRIPSAPSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPASLVGSPASSMTSDKLATGGNCSPAPVGSEYHYTARHYSNHSHKMQVVPQLLQDIMDVEHLWHYNDNDRMSGIQAGGTNTTANNDTILLGVGSGGGTGTANDASSGVECSSNGTTGNGNPSNRRDDRSCSNVSAISNEQRAAPINSNPQMNNTNGNPIQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLERARQLGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00733987;
90% Identity
iTF_01539632;
80% Identity
iTF_01539632;