Bson009361.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bombus sonorus
Gene Symbol
Hr39
Assembly
GCA_029958995.1
Location
JARWAU010000008.1:18613606-18623160[-]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 4 3 2.7e+04 -5.6 5.3 139 157 50 68 22 102 0.48
2 4 3 2.7e+04 -16.4 25.6 43 167 320 438 295 549 0.59
3 4 1.7e-07 0.0015 18.6 0.1 1 19 616 634 616 638 0.95
4 4 2.9e-71 2.6e-67 228.6 0.1 82 408 668 993 635 993 0.77

Sequence Information

Coding Sequence
ATGTCGGAGCAAAACGGGCCCAGCGAGGGCCCTGGACCGGGCCCAGGGCCGGGTCCCGGTTGGTGGCCAACCTCACAGTCCTGGAAAACAAACTCCTGCACCGCTGCTGCCTCCTCGTCCGCTTGTTCGACCGTTTCAGAAAACTCCGCCTCCGTCTCTGCCTCTTGCACCACCTCTACGTCCTCCCTGGCGACCACCACATCGGCCACTTCATCGACCAGCTGCTGCTCCTCCAGCCCTGGCGGTCCCGCCGGACCGTCTTGCACGATCACCGCGGCCCGCTCCTCCGAAACGGGAAAGAACGTCTCTGTCACGACGATCAATGTACCCCCTAATCAGGACATGCACGATGGCAAGGGTATACGCAAGTATCTTGGCGGCCAGAATGGCGTGACAGTATCGGTAGTGTCAAGCTGTGGTTCCATACTGGGATGTGGAAACGCGAATGTTGCGTCTACCACGGGGATAGGCAGTAACACCGGCACGCAGAGTATCGGCATCGGAGTGAACATCCTTGACCAGAGCACGGCGGATGATGACGCGGAGGATAGCGACGTTGAGATAAGCAAAATCGACTTCCGAGGGGTGAATTTGCGTacgaagaagaaacgagacGTGTCTGGCAGTCAGAGTCAAAGCGGGGAGAAAATCGGCGATGGAGAGGCCGAGGATGCGAACGGTTGTTACGATGGAAGCGACGCGTCTCAGCAACAACCGGAGAGGCCTATGTCATGGGAGGGAGAACTGTCCGATCAAGAAATGTCTTCCAATACGATTACAAATCAAGATACGCACGAGGACACGTCAATGGAGGGTGTTCAAGTATGTGGCACGAGTCCCGGACCAATGGAACAAAAATTTCCCATAAAACCAGAGCCAGATTTTCAGTCCAACCCAGGTTTCGCATTTGGCTCTTTTCACGACACCGGATTACCTCTGAATCACGGCCAGCAaatacaacaacaacaacaacaacaacaacaacaacaacaacaacagcgcaACATTGAGAATCTTGAACAGACACAACAAAACGATTTGCCTCTTCTCGTAGGAAAATTACTCGGTGGTTACAATAGTTCGACTCCGAATCACAGTCCAGTGTTGAATCCTAGACACCATCTAACGAAGCATAGCCACACGAGATCGCAGGTGCCGTCACCGGACTCGGCCATTCATTCCGCGTACAGCGTATTCAGCTCCCCGACGCAAAGTCCTCACGCGACTCGCCACTCCCCCCTGGGCGCGGCAAGTCCAGTTCCATCTTCGTCGCTGTCCTTGTCGCGACACAGTTTCAACAATTCCACTTCCTCGTTGTCGCTCTCGTTGTCACACTCCCTCTCGAGAAACAATTCGGACGCCTCGAGCAGCTGCTACAGTTACGGCTCTCTCAGCCCACCCACACACTCGCCCGTCCAGCAACCGAGACATCCGCAGCATCACCAGCATCAAGTTGCTCAAGGAAGCCCGCTTCATCTGCCAGCAACCGCTTCTCCCGCCGTTACTCATCACTACAATTCCACCGCACCGGGTTCCGAGCTACCTCCGGAAGGATACGTTGCGGAAGATCAGGAAGACTGTAGAATATCCTCGGCACCGTCCGGTATATCCACAAGGCAGCAACTAATTAATACCCCGTGTCCAATTTGCGGGGATAAGATCAGTGGTTTTCATTATGGAATATTCTCGTGCGAGTCGTGCAAGGGATTTTTCAAACGCACCGTCCAGAATCGAAAGAATTATGTGTGCCTTAGAGGCTCGGGCTGTTCAGTCACCGTTGTTACCAGGAAAAAATGCCCCGCCTGCAGATTCGACAAGTGCCTCACTATGGGTATGAAGCTCGAGGCGATTAGGGAGGATCGCACCAGGGGTGGCAGAAGTACCTATCAGTGTACGTATACTTTTCCACCAAATTTTGTCGGTAGTTCCGCGAGTAACATGACCAGCGACAAATTAGCTACCGGAGGAAATTGTAGTCCAGCTCCAGCTGGTAACGAACATCACTACGCGGCAAGGCACCATTCGAATCACTCCCATAAGATGCAAGTGGTACCGCAACTTCTCCAGGATATCATGGACGTAGAACACTTGTGGCATTACAACGATAACGATCGTATGACTGGGATTCAAAACGCAGCAACGAATTTTACTAGAAACAACGATTCGATGTTATTGAGCGTTAGAAGCAACGGAGGATCTGGAATAGAGAACGACACAGGTTCGGGTATCGAGCGTTCCTCCAATAGAACTACAGGAAATGGTAATCCTAGTAATAGAAGAGATAACAGATCATGCTCCAATGTTTCTAACGTTGGTAACGAACAACATGCTGCACCCGTTGGTAACAGTTCTCAAATCAACAATACCAATTGTAATCCGACTCAACATCCTGATTTTCTGTCGAACCTCTGCACTATCGCTGATCATCGACTCTACAAAATAGTGAAGTGGTGCAAGAGTTTGCCGTTATTTAAAAACATTTCGATCGATGATCAGATCTGTCTGTTGATTAATTCTTGGTGCGAGCTACTGCTTTTCTCGTGCTGCTTTCGCAGTATGAGCACTCCCGGTGAAATTAGAGTGTCTCTCGGTAAGTCGATTACACTGGAACAAGCTAGGCAGCTTGGCTTAGCGACCTGCATCGAGAGGATGCTTGCATTTACTAACAATTTGAGAAGACTCCGAGTAGATCAGTACGAATACGTGGCGATGAAGGTAATAGTACTGTTGACCTCCGATACGAGTGAACTGAAAGAACCTGAAAAAGTTAGAGCATCTCAGGAAAAGGCTTTACAAGCATTGCAACAATATACTATCGCAAGGTATCCAGAAATGCCTGCTAAGTTTGGTGAATTATTATTGAGAATTCCAGATTTACAAAGAACATGCCAAGCAGGAAAGGAATTATTAAGCGCTAAACGTGCTGAAGGAGAAGGCAGCTCGTTTAATCTGTTGATGGAATTGTTGAGAGGAGATCACTGA
Protein Sequence
MSEQNGPSEGPGPGPGPGPGWWPTSQSWKTNSCTAAASSSACSTVSENSASVSASCTTSTSSLATTTSATSSTSCCSSSPGGPAGPSCTITAARSSETGKNVSVTTINVPPNQDMHDGKGIRKYLGGQNGVTVSVVSSCGSILGCGNANVASTTGIGSNTGTQSIGIGVNILDQSTADDDAEDSDVEISKIDFRGVNLRTKKKRDVSGSQSQSGEKIGDGEAEDANGCYDGSDASQQQPERPMSWEGELSDQEMSSNTITNQDTHEDTSMEGVQVCGTSPGPMEQKFPIKPEPDFQSNPGFAFGSFHDTGLPLNHGQQIQQQQQQQQQQQQQQRNIENLEQTQQNDLPLLVGKLLGGYNSSTPNHSPVLNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHATRHSPLGAASPVPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHPQHHQHQVAQGSPLHLPATASPAVTHHYNSTAPGSELPPEGYVAEDQEDCRISSAPSGISTRQQLINTPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGSGCSVTVVTRKKCPACRFDKCLTMGMKLEAIREDRTRGGRSTYQCTYTFPPNFVGSSASNMTSDKLATGGNCSPAPAGNEHHYAARHHSNHSHKMQVVPQLLQDIMDVEHLWHYNDNDRMTGIQNAATNFTRNNDSMLLSVRSNGGSGIENDTGSGIERSSNRTTGNGNPSNRRDNRSCSNVSNVGNEQHAAPVGNSSQINNTNCNPTQHPDFLSNLCTIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQARQLGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00733987;
90% Identity
iTF_00228733;
80% Identity
iTF_00228733;