Mbic003213.1
Basic Information
- Insect
- Melipona bicolor
- Gene Symbol
- Hr39
- Assembly
- GCA_030673865.1
- Location
- JAHYIQ010000001.1:36428199-36432437[+]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.41 2.7e+03 -2.0 4.6 108 160 24 78 14 109 0.58 2 5 0.94 6.3e+03 -3.2 3.9 94 163 326 393 276 420 0.55 3 5 4 2.7e+04 -12.3 17.2 69 150 412 508 363 535 0.54 4 5 2.5e-08 0.00017 21.7 0.0 1 28 601 628 601 646 0.82 5 5 8.9e-72 6e-68 230.7 0.1 88 408 659 978 628 978 0.81
Sequence Information
- Coding Sequence
- ATGTCGGAGCAAAACGGGCCCAGCGAGGGCCCAGGTCCAGGCCCAGGGCCTGGTCCTGGCTGGTGGCCAGCCTCGCAATCCTGGAAGACGAATTCCTGCACCGCCACCTCCTCATCCACTAGTTCAACCGTTCCAGACAGCTCCGCCTCCGTCTCTGCTTCTTGCACCACCACTACCTCCTCCCTGGCGACCACCACATCGGCCACTTCCTCGACTAGCTGCTGTTCCTCGACCCCTGGCAGTGGACCATCTGGAACGATCACTGCAGTCCGCTCTTCCGAAACAGGAAAGAATGTGTCTGTCACGACGATTAATGTACTCCCTAATCAGGATATGCACGATgGCAAAGGTATATGCAAGTATCTTACCGGTCAAAACGGCGTGACAGTATCCGTAGTGTCAAGCTGTGGCTCCGTACTAGGGTGTGGAAATGCAAACGTCGCGTCAACCACGGGAATTGGCACCAGTACCGGGACGCAGAGTATTGGAATTGGAGTCAACGTCCTCAGCCAGAATACGGCGGATGACGAAGCGGAGGACAGCGACGTCGAGATAAGCAAAATCGACTTTCGGGGAGTGAATTTACgtacgaagaagaaacgagatgTATCGGGTAGCCAGAGCGGTGAGAAAATCGGTGAAGGAGAGGTCGAAGATGGGAACGGCTGTTACGATGGGAATGACGCGTCTCAACAACAACCCGAGAGGCCCATGTCATGGGAAGGAGAACTTTCCGACCAAGAAATGTCTTCCAATACAATTACAAATCAAGATACTCACGAAGATACATCAATGGAGGGTGTTCAAGTGTGTGGCCCGAGTCCGGGACCAATGGAGCAAAAATTTCCGATAAAACCAGAACCAGACTTTCAGTCCAATCCAAGATTCACGTTTGGTTCTTTTCATGACACAGGATTACCTCTGGTTCACGGCCAACAAATACAGCAACAACGCAACATCGAGAATCTTGAGCAGACGCAGCAAAACGATTTGCCTCTTCTCGTAGGAAAATTACTTGGTGGTTATAATAGTTCAACTCCAAATCACAGTCCGGTGTTGAATCCTAGACACCATTTGACAAAGCATAGCCATACAAGATCGCAGGTGCCGTCACCGGACTCGGCGATTCATTCCGCATACAGCGTATTCAGTTCTCCAACGCAAAGTCCTCACGCAGCTCGCCATTCCGCTCTAGGCACGGGAAGTCCAGTCCCGTCTTCGTCGCTGTCCTTGTCGCGACACAGTTTCAATAATTCCACCTCTTCGTTGTCGCTCTCGTTGTCACATTCGCTCTCGAGAAATAATTCGGATGCCTCGAGCAGCTGCTACAGCTACGGCTCTCTTAGTCCACCCACGCACTCGCCCGTTCAACAACCGAGACATCCGCAGCATCACCAGCATCAAGTTCCTCAAGGAAGTCCACTCCATCTACCAGCAACGGCCTCTCCCGTCATTGCTCATCACTATTCTTCCTCTGCACCGGGTTCAGAGCTATCTCCAGAAGGACACGCTGCTACAGACGATCAGGAAGACTGCAGAATACCTTCAGCACCGTCTGGAATATCTACGAGACAGCAATTGATTAATAGCCCGTGTCCAATTTGTGGGGACAAGATCAGCGGTTTTCATTACGGGATATTCTCGTGCGAGTCGTGTAAGGGATTTTTTAAACGCaccgtccagaatcgaaagAATTATGTGTGCCTTAGAGGCGCGGGCTGTCCAGTCACCGTCGCTACCAGGAAAAAATGCCCCGCCTGTAGATTTGACAAGTGCCTCAATATGGGTATGAAGCTCGAGGCGATTAGAGAGGATCGCACCAGAGGTGGCAGAAGTACGTACCAGTGTACATATACTCTTCCAGCAAGTCTTGTCGGTAGTTCCGCGAGTAACATCGCCAACGATAAATTAACTACTGGGGGAAATTGTAGTCCAGCTCCAGCTGGTAACGAACATCACTATCCGGCAAGACACCACTCGAATCACTCGCATAAAATGCAAGTGGTACCGCAACTTCTACAGGATATCATGGATGTAGAACATTTATGGCATTACAATGACAATGATCGCATGACTGGGATTCAAAATGCAGGGATGAATCCGTCTAGAAACAACGATACAATGTTATTGGGCGTCAGAAGTAGCGGAGGATCTGGAATAGAGAATGACACAGATTCGAGTGTTGAGTGTTCGTCCAATGGAACCACAGGAAATGGCAATCCCAGCAACAGAAGAGACGACAGATCATGCTCTAGTGTTTCAAATGCTGGTAACGAACAATGTGCCGCATCCATTAGTAGCAGTTCTCAAATTAACAATACCAATGGTAATCCAACACAACATCCTGATTTCCTGTCAAACCTCTGCAACATCGCTGACCACCGACTCTATAAAATAGTGAAATGGTGCAAGAGTTTaccattatttaaaaacatttcaatcgATGATCAAAtctgtttgttaattaattcctGGTGCGAACTACTGCTCTTCTCATGCTGTTTTCGCAGCATGAGTACTCCCGGTGAAATTAGAGTGTCTCTCGGCAAGTCGATTACACTAGAACAAGCTAGGCAGCTTGGTTTGGCGACCTGCATTGAGAGGATGCTTGCATTCACTAACAATTTGAGAAGGCTCCGAGTAGATCAATACGAATATGTGGCAATGAAGGTAATAGTATTGTTAACCTCTGATACAAGTGAATTAAAAGAACCTGAAAAAGTTAGAGCATCTCAGGAAAAGGCTTTACAAGCACTACAGCAATATACTATAGCAAGGTATCCGGAAATGCCTGCCAAGTTTGGTGAATTATTATTGAGAATTCCAGATTTACAAAGAACATGCCAGGCAGGAAAGGAATTGTTAAGTGCGAAACGTGCTGAAGGAGAAGGCAGCTCATTTAATTTGTTGATGGAATTGTTGAGAGGAGATCATTGA
- Protein Sequence
- MSEQNGPSEGPGPGPGPGPGWWPASQSWKTNSCTATSSSTSSTVPDSSASVSASCTTTTSSLATTTSATSSTSCCSSTPGSGPSGTITAVRSSETGKNVSVTTINVLPNQDMHDGKGICKYLTGQNGVTVSVVSSCGSVLGCGNANVASTTGIGTSTGTQSIGIGVNVLSQNTADDEAEDSDVEISKIDFRGVNLRTKKKRDVSGSQSGEKIGEGEVEDGNGCYDGNDASQQQPERPMSWEGELSDQEMSSNTITNQDTHEDTSMEGVQVCGPSPGPMEQKFPIKPEPDFQSNPRFTFGSFHDTGLPLVHGQQIQQQRNIENLEQTQQNDLPLLVGKLLGGYNSSTPNHSPVLNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSALGTGSPVPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHPQHHQHQVPQGSPLHLPATASPVIAHHYSSSAPGSELSPEGHAATDDQEDCRIPSAPSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPASLVGSSASNIANDKLTTGGNCSPAPAGNEHHYPARHHSNHSHKMQVVPQLLQDIMDVEHLWHYNDNDRMTGIQNAGMNPSRNNDTMLLGVRSSGGSGIENDTDSSVECSSNGTTGNGNPSNRRDDRSCSSVSNAGNEQCAASISSSSQINNTNGNPTQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQARQLGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00733987;
- 90% Identity
- iTF_00228733;
- 80% Identity
- iTF_00983022;