Bcul017867.1
Basic Information
- Insect
- Bombus cullumanus
- Gene Symbol
- Hr39
- Assembly
- GCA_014737535.1
- Location
- JACXIX010000033.1:2188034-2197929[-]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3 1.8e+04 -5.8 5.7 124 151 42 69 22 100 0.47 2 4 1.5 9.5e+03 -4.3 7.7 72 163 308 398 251 434 0.54 3 4 3 1.8e+04 -11.8 18.6 44 150 393 513 365 539 0.50 4 4 2.2e-75 1.4e-71 242.2 1.6 1 408 606 984 606 984 0.79
Sequence Information
- Coding Sequence
- ATGTCGGAGCAAAACGGGCCCAGCGAGGGCCCTGGGCCCGGTCCAGGGCCGGGTCCTGGTTGGTGGCCAACCTCGCAATCCTGGAAGACGAACTCCTGCACCGCTGCCTCCTCGTCTACTTGTTCAACCGTTCCAGACAACTCCGCCTCCGTCTCTGCCTCTTGCACCACCTCTACGTCCTCCTTGGCGACCACCACATCGGCCACTTCATCGACCAGCTGCTGTTCCTCCACCCCTGGCGGTGGACCGTCTTGCACGATCACCGCGGCCCGCTCCTCCGAAACGGGAAAGAACGTCTCTGTCACGACGATCAATGTACCCCCTAATCAGGACATGCACGATGGCAAGGGTATATGCAAGTATCTTGGCGGCCAGAATGGCGTGACAGTGTCGGTAGTGTCAAGCTGTGGCTCCATTCTGGGATGTGGAAACGCGAATGTTGTGTCTACCACGGGGATAGGCAGTAGCGCCGGCACACAGAGTATTGGCATCGGAGTGAACATCCTTGACCAGAGCACGGCGGATGATGACGCGGAGGATAGCGACGTTGAGATAAGCAAAATCGACTTCCGAGGGGTGAATTTGCGTACGAAGAAGAAACGAGACGTGTCTGGTAGTCAGAGTCAAAGCGGGGAGAAAATCGGCGATGGAGAGGTCGAGGATGGGAACGGTTGTTACGATGGAAGCGATGCGTCTCAGCAACAACCGGAGAGGCCCATGTCATGGGAGGGAGAACTATCCGATCAAGAAATGTCTTCCAATACGATTACAAATCAAGATACACACGAGGACACGTCGATGGAGGGTGTTCAAGTATGTGGCGCGAGTCCCGGGCCAATGGAACAAAAATTTCCCATAAAACCAGAACCAGATTTTCAGTCGAACCCAGGTTTCACATTTGGCTCTTTTCACGACACCGGATTACCTCTGAATCACGGCCAGCAAATACAACAACAGCAACAGCAGCGCAACATCGAGAATCTTGAACAAACGCAACAAAACGATTTGCCTCTTCTCGTAGGAAAATTACTTGGCGGTTACAATAGTTCGACTCCGAATCACAGTCCAGTGTTGAATCCTAGACACCATTTAACAAAGCATAGCCACACGAGATCGCAGGTGCCGTCACCGGACTCGGCCATTCATTCCGCATACAGCGTATTCAGCTCCCCGACGCAAAGTCCTCACGCAACTCGCCACTCCCCCCTGGGCGCGGCAAGTCCAGTTCCATCTTCGTCGCTATCCTTGTCGCGACACAGTTTCAACAATTCCACTTCCTCGTTGTCGCTCTCGTTGTCACACTCCCTCTCGAGAAACAATTCGGACGCCTCGAGCAGCTGCTACAGCTACGGCTCTCTCAGCCCACCCACACACTCGCCCGTCCAGCAACCGAGACATCCGCAGCATCATCAGCATCAAGTTGCTCAAGGAAGCCCGCTTCATCTGCCAGCAACCGCTTCCCCCGCCATTACTCATCACTACACTTCCTCTGCACCGGGTTCTGAGCTATCTCCAGAAGGACACGCTGCTACAGACGATCAGGAAGACTGTAGAATACCCTCGGCACCGTCTGGTATATCCACGAGGCAGCAACTAATCAATACCCCGTGTCCAATTTGCGGGGATAAGATCAGTGGTTTTCATTATGGAATATTCTCGTGCGAGTCGTGCAAGGGATTTTTCAAACGCACCGTCCAGAATCGAAAGAATTATGTGTGCCTTAGAGGCGCGGGCTGTCCAGTCACCGTTGTTACCAGGAAAAAATGCCCCGCCTGCAGATTCGAAAAGTGCCTCAGTATGGGTATGAAGCTGGAGGCGATTAGGGAGGATCGCACCAGAGGTGGCAGAAGTACCTATCAGTGTACATATACTTTTCCACCAAATTTTGTCGGCAGTCAACAAGCAAGTAACATGTCCAGCGACAAATTAGCTACCGGAGGAAATTGTAGTCCAGCTCCAGCTGGTAACGAACATCACTATCCGGCAAGGCACCATTCGAATCACTCCCATAAGATGCAAATGGTACCGCAACTTCTACAGGATATCATGGACGTAGAGCACTTGTGGCATTACAATGATAACGATCGTATGACCGGGATTCAAAACGCAGGAACGAATCTTACTAGAAACAACGATTCAATGTTATTGAGTGTTAGAAGTAACGGAGGATCTGGAATAGAGAACGACACAGGTTCAGGTATTGAGTGTTCCTCCGATAGAACTACGGGAAATGGTAATCCTAGTAGTAGAAGAGATAACAGATCATGCTCCAATGTTTCTACTGTTGGTAACGAACAACACGTTGCATCCGTTGGTAACAGTTCTCAAATCAACAATGCCAATTGTAATCCAACTCAACATCCTGATTTTCTGTCGAACCTCTGCAATATCGCTGATCATCGACTCTACAAAATAGTGAAGTGGTGCAAGAGTTTGCCGTTATTTAAAAACATTTCGATCGATGATCAGATCTGTCTGTTGATTAATTCTTGGTGCGAGCTACTGCTCTTCTCATGCTGCTTTCGCAGTATGAGCACTCCCGGTGAAATTAGAGTGTCTCTCGGTAAGTCGATTACACTGGAACAAGCTAGGCAGCTTGGCTTAGCGACCTGCATCGAGAGGATGCTTGCATTTACTAACAATTTGAGAAGGCTCCGAGTAGATCAGTACGAATACGTGGCGATGAAGGTAATAGTACTGTTGACCTCTGATACAAGTGAACTGAAAGAACCTGAAAAAGTTAGAGCATCTCAGGAAAAGGCTTTACAAGCATTGCAACAATATACTATCGCAAGGTACCCAGAAATGCCTGCTAAATTTGGTGAATTATTATTGAGAATTCCAGATTTACAAAGAACATGCCAAGCAGGAAAGGAATTATTAAGTGCTAAACGTGCTGAAGGAGAAGGCAGCTCGTTTAATCTGTTGATGGAATTGTTGAGAGGAGATCACTGA
- Protein Sequence
- MSEQNGPSEGPGPGPGPGPGWWPTSQSWKTNSCTAASSSTCSTVPDNSASVSASCTTSTSSLATTTSATSSTSCCSSTPGGGPSCTITAARSSETGKNVSVTTINVPPNQDMHDGKGICKYLGGQNGVTVSVVSSCGSILGCGNANVVSTTGIGSSAGTQSIGIGVNILDQSTADDDAEDSDVEISKIDFRGVNLRTKKKRDVSGSQSQSGEKIGDGEVEDGNGCYDGSDASQQQPERPMSWEGELSDQEMSSNTITNQDTHEDTSMEGVQVCGASPGPMEQKFPIKPEPDFQSNPGFTFGSFHDTGLPLNHGQQIQQQQQQRNIENLEQTQQNDLPLLVGKLLGGYNSSTPNHSPVLNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHATRHSPLGAASPVPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHPQHHQHQVAQGSPLHLPATASPAITHHYTSSAPGSELSPEGHAATDDQEDCRIPSAPSGISTRQQLINTPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVVTRKKCPACRFEKCLSMGMKLEAIREDRTRGGRSTYQCTYTFPPNFVGSQQASNMSSDKLATGGNCSPAPAGNEHHYPARHHSNHSHKMQMVPQLLQDIMDVEHLWHYNDNDRMTGIQNAGTNLTRNNDSMLLSVRSNGGSGIENDTGSGIECSSDRTTGNGNPSSRRDNRSCSNVSTVGNEQHVASVGNSSQINNANCNPTQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQARQLGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00733987;
- 90% Identity
- iTF_00228733;
- 80% Identity
- iTF_00217804;